PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G022400.2.p
Common NameSb05g001890, SORBIDRAFT_05g001890
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 475aa    MW: 48381.9 Da    PI: 8.5688
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G022400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.7e-18371405135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           Cs+C++ +Tp+WR gpdg+ tLCnaCG++y+ ++l
  Sobic.005G022400.2.p 371 CSHCHSPETPQWRAGPDGPGTLCNACGIRYAANRL 405
                           ******************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.1E-17365419IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.596365403IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-14367428No hitNo description
Gene3DG3DSA:3.30.50.104.5E-14369404IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.84E-16370426No hitNo description
PROSITE patternPS003440371396IPR000679Zinc finger, GATA-type
PfamPF003208.5E-16371405IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MFFADDALDG GGGGEGAEGN LLGDPTAAKP KPAAHITAGG PVHTRRSLGG AIVPDDASPL  60
PAPMPAGAFP LQPKTNACRA FEFDGPLFNY ASPPPPPPGT APVPPGGALP AFVTNNSTPP  120
VFVTNNSTPP LPALIMPAAP APMPPAAGLH ACSALPGIAS NGAPAPPALP VPMPAAPALM  180
PAAGLDACGA LRGIVSNGAA PAPPPPLMAL TMPARALHPN AAALSGGVYS CANAPAHGPP  240
SATPSSSPPS GASSGSGHCP SSTTSEPEFL QPHHAWVVPR KQRSPPAVNR RKRPWLLDFP  300
LHALPAVVAP PPANLGAGDD DAKNRYALVP VVVPPPPPGN TAGGDDIAGG GGIRRRRPAP  360
RQRNRQAQRV CSHCHSPETP QWRAGPDGPG TLCNACGIRY AANRLLPEYR PSTAPSFRSG  420
QHSNRHRKVM KLREQQTMNA AEEEKASEQA MEDDRREKDD GFMGVCAYIS AAGL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354361RRRPAPRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G022400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9729724e-68EU972972.1 Zea mays clone 390973 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Z5RH040.0A0A1Z5RH04_SORBI; Uncharacterized protein
STRINGSb05g001890.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16076913
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-26GATA transcription factor 4