PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G020200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 384aa MW: 40616.6 Da PI: 7.4358 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9.4e-17 | 38 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl Sobic.005G020200.2.p 38 KGPWTPEEDIILVSYIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYL 85 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.1 | 5.5e-15 | 91 | 136 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++v++ +lG++ W++Ia++++ Rt++++k++w+++l Sobic.005G020200.2.p 91 RGNFTPHEEGIIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 136 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-23 | 29 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.517 | 33 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.68E-30 | 35 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-13 | 37 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 38 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.54E-11 | 40 | 85 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.0E-24 | 89 | 141 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-13 | 90 | 138 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.74 | 90 | 140 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.4E-13 | 91 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.51E-9 | 93 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MGADLLATIN IATGRGREGA AGAAMGRPPC CDKEGIKKGP WTPEEDIILV SYIQEHGPGN 60 WRSVPINTGL MRCSKSCRLR WTNYLRPGIR RGNFTPHEEG IIVHLQSLLG NRWAAIASYL 120 PQRTDNDIKN YWNTHLKKKL KKHQAIGAIF APPPPPASDS SSSSSIVVMP TTTVGGGGGG 180 CHVHHHHRDM LGGGTNLLVS RDSYYARPSG GAGCCSNPAE VAQLIARRSP FAADGGGDSS 240 SSSYASSMDN ISKLLTGFMK QQQSSPSPDA AAAADIKPSS AAHVNNHHAL LSSSSSFHHM 300 SAAGTGSGTP PAAACFNDMT MPSPPHVQQQ AALMGHHGGY DDDPRQASPL SPIEKWLFEE 360 AAEQVGDLMD LSEDCCSSVP MMF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-26 | 38 | 140 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 6e-26 | 38 | 140 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 6e-26 | 38 | 140 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G020200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728308 | 1e-154 | KJ728308.1 Zea mays clone pUT6588 MYB transcription factor (MYB69) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021316858.1 | 0.0 | transcription factor MYB30 | ||||
TrEMBL | A0A1Z5RG87 | 0.0 | A0A1Z5RG87_SORBI; Uncharacterized protein | ||||
STRING | Sb05g001730.1 | 1e-174 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 6e-78 | myb domain protein 60 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G020200.2.p |