PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G018700.1.p | ||||||||
Common Name | Sb05g001590, SORBIDRAFT_05g001590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 398aa MW: 42737.5 Da PI: 8.0418 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.6 | 2.9e-54 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdee+++ yL +k + ++ ++i evd++k+ePwdLp+k++ +ekewyfF+++d ky+tg+r+nratk+gyWkatgkd Sobic.005G018700.1.p 16 LPPGFRFHPTDEEVITSYLLQKFLNPSFAP-HAIGEVDLNKCEPWDLPSKANMGEKEWYFFCHKDMKYPTGTRTNRATKEGYWKATGKD 103 79*************************888.78***************99999************************************ PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e++++ ++elvg+kktLvfy grap+g+kt+Wvmhe+rl Sobic.005G018700.1.p 104 REIFKQpGRELVGMKKTLVFYMGRAPRGTKTNWVMHEFRL 143 *****988899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.11E-60 | 13 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.19 | 16 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-27 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MVERSVKSEH GVDLFLPPGF RFHPTDEEVI TSYLLQKFLN PSFAPHAIGE VDLNKCEPWD 60 LPSKANMGEK EWYFFCHKDM KYPTGTRTNR ATKEGYWKAT GKDREIFKQP GRELVGMKKT 120 LVFYMGRAPR GTKTNWVMHE FRLDGKSRHT NDSNSNLRFN PKDEWVVCKV HHKGGEEASS 180 KKAGGGGGEE HYSSAGTPNV SSVEAGEGGD EFLVDSLLDY SSYFNSSLPL TPSTTTTTIS 240 AAAPPYNADL LYPVHTTTAA AAANAGLTTT TTTTSSRFVG LPTDGSNYSQ HAAAVANSVA 300 AATKNNDDDS SASWNMLRHA ADNKAAMGTN YSLHHQAMVA KVLGSGCGVS PNFGAGLPPA 360 GSSVAAAGII AQNNVVPQQR LAGNYRGNYA AGYHTSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-53 | 14 | 173 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-53 | 14 | 173 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-53 | 14 | 173 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-53 | 14 | 173 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-53 | 14 | 173 | 18 | 168 | NAC domain-containing protein 19 |
3swm_B | 9e-53 | 14 | 173 | 18 | 168 | NAC domain-containing protein 19 |
3swm_C | 9e-53 | 14 | 173 | 18 | 168 | NAC domain-containing protein 19 |
3swm_D | 9e-53 | 14 | 173 | 18 | 168 | NAC domain-containing protein 19 |
3swp_A | 9e-53 | 14 | 173 | 18 | 168 | NAC domain-containing protein 19 |
3swp_B | 9e-53 | 14 | 173 | 18 | 168 | NAC domain-containing protein 19 |
3swp_C | 9e-53 | 14 | 173 | 18 | 168 | NAC domain-containing protein 19 |
3swp_D | 9e-53 | 14 | 173 | 18 | 168 | NAC domain-containing protein 19 |
4dul_A | 9e-53 | 14 | 173 | 15 | 165 | NAC domain-containing protein 19 |
4dul_B | 9e-53 | 14 | 173 | 15 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.9246 | 0.0 | callus| root| shoot |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Predominantly expressed in developing vascular tissue of the leaves and roots, and in developing flowers. {ECO:0000269|PubMed:15654622}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in phloem. {ECO:0000269|PubMed:15654622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G018700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC840942 | 0.0 | KC840942.1 UNVERIFIED: Miscanthus lutarioriparius NAC13-like mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448920.1 | 0.0 | NAC domain-containing protein 77 | ||||
Swissprot | Q5CD17 | 1e-103 | NAC77_ORYSJ; NAC domain-containing protein 77 | ||||
TrEMBL | C5Y3M2 | 0.0 | C5Y3M2_SORBI; Uncharacterized protein | ||||
STRING | Sb05g001590.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5120 | 30 | 63 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 2e-76 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G018700.1.p |
Entrez Gene | 8067634 |