PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G018500.1.p | ||||||||
Common Name | Sb05g001580, SORBIDRAFT_05g001580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 403aa MW: 44555.9 Da PI: 7.2194 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.4 | 4.1e-51 | 29 | 156 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp+GfrFhPtdeel+v+yL +++++ ++++ +i+ev+iy+++PwdLp+k+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+d Sobic.005G018500.1.p 29 LPAGFRFHPTDEELIVHYLMNQAASIPCPV-PIIAEVNIYQCNPWDLPAKALFGESEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTD 116 799***************************.88***************8877899********************************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++s+ +g+++g+kk Lvfy gr p+g+ktdW+mheyrl Sobic.005G018500.1.p 117 KAIMSTpTGQNIGVKKALVFYGGRPPRGVKTDWIMHEYRL 156 *****989999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-63 | 22 | 188 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.702 | 29 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.6E-26 | 30 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MAAAAMPSPS PSRSSSSCCR VAAVPNLNLP AGFRFHPTDE ELIVHYLMNQ AASIPCPVPI 60 IAEVNIYQCN PWDLPAKALF GESEWYFFSP RDRKYPNGAR PNRAAGSGYW KATGTDKAIM 120 STPTGQNIGV KKALVFYGGR PPRGVKTDWI MHEYRLVTAD ADGKTTAAKR RGGSMRLDDW 180 VLCRIHKKSN DFQFQLLSEQ EQDGSSTVEQ ESPKSESLEQ EQFQFQLHQT TTLTMTKSCS 240 LTDLLNSIDY SALSQILADG PVDGNQEQLP QPQQNPPPLI YTTTTHETHQ ALINNYNNNN 300 NNNKLNNSHL NYLPHTNAAC SDYVVVANNN YDNGVNKRKR MMMMTAAGAM DEGAGSNGFS 360 KKLKAVLPTD SKNSSYCNQQ VVDTSGLFQY SSLLSYPFLE MQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-75 | 23 | 193 | 9 | 173 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.1157 | 0.0 | panicle| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the base of the inflorescence meristem and at late stages of development in petals and stamens. Up-regulated during leaf senescence. {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:9489703}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in senescing leaves, petals and sepals. {ECO:0000269|PubMed:16640597}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to, and transactivates the promoter of the abscisic aldehyde oxidase AAO3. Promotes chlorophyll degradation in leaves by enhancing transcription of AAO3, which leads to increased levels of the senescence-inducing hormone abscisic acid (ABA) (PubMed:25516602). Involved in the control of dehydration in senescing leaves. Binds to the DNA sequence 5'-CACGTAAGT-3' of SAG113 promoter. SAG113 acts as negative regulator of ABA signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22184656). Transcription factor of the NAC family involved in senescence. May function in the transition between active cell division and cell expansion (PubMed:16640597). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:25516602}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G018500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by the heterodimer APETALA3 (AP3)/PISTILLATA (PI) (PubMed:9489703). Induced by senescence (PubMed:22184656, PubMed:24659488, PubMed:25516602). Induced by abscisic acid (ABA) (PubMed:22184656, PubMed:25516602). Induced by ethylene (PubMed:25516602). {ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:24659488, ECO:0000269|PubMed:25516602, ECO:0000269|PubMed:9489703}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP742346 | 1e-141 | KP742346.1 Saccharum spontaneum DREB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448919.1 | 0.0 | NAC transcription factor 29 | ||||
Swissprot | O49255 | 1e-83 | NAC29_ARATH; NAC transcription factor 29 | ||||
TrEMBL | C5Y3M1 | 0.0 | C5Y3M1_SORBI; NAC69 | ||||
STRING | Sb05g001580.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3803 | 37 | 75 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 7e-81 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G018500.1.p |
Entrez Gene | 8083036 |