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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.005G017500.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
GRAS |
Protein Properties |
Length: 712aa MW: 75094 Da PI: 6.5896 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.005G017500.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 417.7 | 1e-127 | 343 | 703 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsP 89
+lLl+cAeav++++l a+++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ lpp + + + + +++aa+++f+ +sP
Sobic.005G017500.2.p 343 LTLLLQCAEAVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPPGTPAAARlHGRVAAAFQVFNGISP 431
579************************************************************88777766658899999********* PP
GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g+ s e+le+tg+rL++fA++lg+pfef
Sobic.005G017500.2.p 432 FVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMEALEATGKRLSDFADTLGLPFEF 516
************************************************************....************************* PP
GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
+ va++ ++++e+L v ++Ea+aV++ + h+l+d ++s ++ +L+l+++l Pkvv++veq+++h s+sFl+rf+ea++yysal
Sobic.005G017500.2.p 517 CA-VAEKAGNVDPEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDLSH-SGSFLARFVEAIHYYSAL 597
**.7*************************9..999999999999....**********************.899*************** PP
GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
fdsl+a+++++s er++vE++ll+rei+nv+a g +r+ + + +++Wre+l ++GF++++l +aa+qa+lll +++sdgy++ ee+g
Sobic.005G017500.2.p 598 FDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRAASLAGSAAAQASLLLGMFPSDGYTLVEENG 685
*************************************999987.********************************************* PP
GRAS 357 slvlgWkdrpLvsvSaWr 374
+l lgWkd L+++SaWr
Sobic.005G017500.2.p 686 ALKLGWKDLCLLTASAWR 703
*****************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 712 aa
Download sequence Send
to blast |
MGSSSLLLFP SSSSAASTAP HAFPHSHATA TASTSTSTSL LPPLPSPHHL PLPPPSSSSQ 60 SQDHFLLHYL HQLDRQEAAA AAAMVRKRPA QDMDLPPPRR HVTGDLSDVT AAAAGSGGAP 120 PSSASAQLPA LPTQLHQLPP AFQHHAAEVG VPVPAPPPPP PNPAAHAQAG GEAAASTTAW 180 VDGIIRDIIG SSGGAAVSIT QLIHNVREII HPCNPGLASL LELRLRSLLA ADPAPLPPPP 240 PQPSQQHALL HGVGAPAAAA GLTLPPPPPL QDKRRHEPPP PPPPPQQQQQ EEPHPASQSP 300 KAPTAEETAA AAAAAAAAAA AAAKERKEEQ RRKQRDEEGL HLLTLLLQCA EAVNADNLDD 360 AHQTLLEIAE LATPFGTSTQ RVAAYFAEAM SARLVSSCLG LYAPLPPGTP AAARLHGRVA 420 AAFQVFNGIS PFVKFSHFTA NQAIQEAFER EERVHIIDLD IMQGLQWPGL FHILASRPGG 480 PPRVRLTGLG ASMEALEATG KRLSDFADTL GLPFEFCAVA EKAGNVDPEK LGVTRREAVA 540 VHWLHHSLYD VTGSDSNTLW LIQRLAPKVV TMVEQDLSHS GSFLARFVEA IHYYSALFDS 600 LDASYGEDSP ERHVVEQQLL SREIRNVLAV GGPARTGDVK FGSWREKLAQ SGFRAASLAG 660 SAAAQASLLL GMFPSDGYTL VEENGALKLG WKDLCLLTAS AWRPIQMPPC R*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in early stages of lateral root primordium formation, becoming restricted to the endodermal cell lineage at later stages. {ECO:0000269|PubMed:10948251}. |
Uniprot | TISSUE SPECIFICITY: Expressed in the root endodermis and in a single file of cells through the quiescent center. {ECO:0000269|PubMed:10948251}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in establishing and maintaining the correct radial pattern in the root apical meristem. {ECO:0000269|PubMed:10948251}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT063682 | 0.0 | BT063682.1 Zea mays full-length cDNA clone ZM_BFc0094J16 mRNA, complete cds. |