PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.005G001500.1.p

Common Name

Sb05g000310, SORBIDRAFT_05g000310

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 341aa MW: 36180.2 Da PI: 9.1715

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.005G001500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.3e-39	58	116	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +al+cprC+s+ntkfCyynnys+sqPryfCk+CrryWt+GGalrnvPvGgg+rknk++s Sobic.005G001500.1.p 58 EALRCPRCNSNNTKFCYYNNYSTSQPRYFCKGCRRYWTHGGALRNVPVGGGCRKNKRTS 116 7899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	54	113	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.9E-33	59	114	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.394	60	114	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	62	98	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MDMSSSSTAA ASSPQNHQQE AIVSSPIIKE EARSPKQAQV TQQASGSGER KPRPQLAEAL 60 RCPRCNSNNT KFCYYNNYST SQPRYFCKGC RRYWTHGGAL RNVPVGGGCR KNKRTSGSIS 120 ASGTSSSSSA AYAPLSPSTN TSSSKMSINT QLMMVPNMMM STSSMTGLFP NVLPTLMSAT 180 EGGEFNFTMD NQHASLPFTP MSLSNQASVP VLAAGESGTM PSFLEMLRKG LLHGSSSYDT 240 GLAMSDGNNG MDMSFPLPAY GAMHGHGLSG STTNDARQLV GTQQGVNTGG GFVGSTGVQE 300 EEEEGDNKAM VKSNKNNNGG SLLDRYWIKP NNNNNKRQQG *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Seed endosperm. {ECO:0000269\|PubMed:9207153}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.005G001500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ540085	0.0	HQ540085.1 Sorghum bicolor clone SbDof19 Dof-type zinc finger protein gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448852.1	0.0	dof zinc finger protein PBF
Swissprot	O24463	1e-150	PBF_MAIZE; Dof zinc finger protein PBF
TrEMBL	C5Y2M8	0.0	C5Y2M8_SORBI; Uncharacterized protein
STRING	Sb05g000310.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	Sobic.005G001500.1.p
Entrez Gene	8066529

Publications ? help Back to Top
Lang Z, et al. Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication. J. Hered., 2014 Jul-Aug. 105(4): p. 576-582 [PMID:24683184] Zhang Z,Zheng X,Yang J,Messing J,Wu Y Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7 [PMID:27621432]