PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G357200.1.p
Common NameSb04g038370, SORBIDRAFT_04g038370
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 693aa    MW: 75959.3 Da    PI: 4.6835
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G357200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-07113133425
                           ---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                           ++C +f++ G C  GdrC+F H
  Sobic.004G357200.1.p 113 VPCYYFQK-GMCTKGDRCTFLH 133
                           69******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00311543IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.5071544IPR000571Zinc finger, CCCH-type
PfamPF156633.0E-111671No hitNo description
PROSITE profilePS5010310.8874672IPR000571Zinc finger, CCCH-type
SMARTSM0035654871IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178109136IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5109135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6110134IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4113134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5114134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MDSSAARPDE EEARRRRSTD CIYFLASPLT CKKGSECDYR HSDAARMNPR DCWYWFHGNC  60
ANPKCSFRHP PLDNLAGAPT IPRPAQQPVP QASASVPAQP HGSAVPAIAK QAVPCYYFQK  120
GMCTKGDRCT FLHAPQSGEK PAAQPPAKVF TPALHLNPPL KNSWTKPNSS SQQSTPAVGV  180
VDKPKASAHD GKPLLHHKQS LTTSRADHPS RVYQNHSNSY AQPGALKRYQ PQPSVQDGVT  240
DNGMEAGEFV TDPSAGSGMI VGAAEDDAQQ SFKGNNTTYN HRANGTGGMT RQTHGGYESE  300
RPYRNSAERS SSEKRITQRE HIPAVVAGSS DLRHRLLKQR KLNNNSRSIE APGRHDTHLE  360
DERNGQHRSR GEQQDGLSRS RLRDRIRLPG ETSFDRLGSR SEEWDRGSRA RLSPPKPSDL  420
RGRLHERLKA RSAEEIQGNS AKDLVVKENS SEDTESLNFA GPKSLAELKA KKGVGRSGED  480
AIVKGLGSSR VTSEIVSSRE AAPFEGPKPL STILKRKREA ASEIPAAQPG IIQEADNYAA  540
GVEEEFQSVA HDTVGENMEG IGEEEEEEEA FHPEDDVAYD DNADEAAAAQ ELDEYQDTEA  600
AAEGNADEAA VAQELDEYQD AEAAAEDYDD EAAGAQELQE HQDGEAAEED YDYEVADINA  660
EEENDYQEYQ DDDDNLEDED DDFARKVSVM IS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G357200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9753420.0EU975342.1 Zea mays clone 488116 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453096.10.0zinc finger CCCH domain-containing protein 19
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLC5XWR80.0C5XWR8_SORBI; Uncharacterized protein
STRINGSb04g038370.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123
Representative plantOGRP24551220
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]