PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G354700.1.p | ||||||||
Common Name | Sb04g038140, SORBIDRAFT_04g038140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | TCP | ||||||||
Protein Properties | Length: 244aa MW: 24484.5 Da PI: 10.7658 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.9 | 9e-39 | 32 | 120 | 2 | 88 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg 88 a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +s++s+s ++ Sobic.004G354700.1.p 32 AVRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSTSSTSPHP 120 789*************************************************************9999988854444444443322222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-33 | 38 | 125 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.209 | 38 | 92 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MTTRPDGSGS AAPADKQLVP VSNGNGNSGA LAVRKAPSKD RHSKVDGRGR RIRMPIICAA 60 RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTSSPSSL RSTSSTSPHP 120 LSASPTAGLP HAAAPFILGK RVRGDGADAE PTVAAPAPGF WALPARADFG QLWSFAAAPE 180 MMVAAAAAAA AAPAMAGEAS AARVGNYLPV AQGNLNLLAS FSGGPAPTAA AATAGRAEEE 240 TAR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G354700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972127 | 1e-118 | EU972127.1 Zea mays clone 375636 hypothetical protein mRNA, complete cds. | |||
GenBank | KJ727695 | 1e-118 | KJ727695.1 Zea mays clone pUT5634 TCP transcription factor (TCP4) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454824.1 | 1e-171 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 2e-77 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | C5XWP0 | 1e-169 | C5XWP0_SORBI; Uncharacterized protein | ||||
STRING | Sb04g038140.1 | 1e-170 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 | Representative plant | OGRP8514 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 3e-45 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G354700.1.p |
Entrez Gene | 8084453 |