PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G354301.1.p | ||||||||
Common Name | Sb04g038100, SORBIDRAFT_04g038100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1090aa MW: 117299 Da PI: 8.0554 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 16.3 | 2.2e-05 | 356 | 373 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C+ CH+G C++C Sobic.004G354301.1.p 356 CGNHACKDMCHPGSCGEC 373 ****************** PP | |||||||
2 | zf-NF-X1 | 18.1 | 5.8e-06 | 414 | 431 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C+ CH G+CppC Sobic.004G354301.1.p 414 CGVHRCKVNCHDGECPPC 431 ****************** PP | |||||||
3 | zf-NF-X1 | 18.4 | 4.6e-06 | 509 | 527 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+Cq lCH G CppC Sobic.004G354301.1.p 509 CGQHSCQLLCHSGHCPPCL 527 ******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 6.56E-7 | 107 | 184 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 117 | 177 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50089 | 8.934 | 117 | 178 | IPR001841 | Zinc finger, RING-type |
SMART | SM00438 | 0.023 | 237 | 255 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.1 | 239 | 254 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 6.02E-10 | 282 | 330 | No hit | No description |
Pfam | PF01422 | 0.084 | 292 | 309 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0043 | 292 | 311 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.59E-9 | 346 | 389 | No hit | No description |
Pfam | PF01422 | 0.0031 | 356 | 373 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0013 | 356 | 375 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.90E-12 | 404 | 452 | No hit | No description |
Pfam | PF01422 | 6.9E-5 | 414 | 431 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 3.7E-4 | 414 | 433 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 2.2 | 470 | 481 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 230 | 470 | 482 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.90E-8 | 499 | 551 | No hit | No description |
Pfam | PF01422 | 1.4E-4 | 509 | 526 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 1.1E-4 | 509 | 528 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.57E-4 | 556 | 604 | No hit | No description |
Pfam | PF01422 | 62 | 566 | 582 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.34 | 566 | 584 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.1 | 619 | 634 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 4.1 | 619 | 654 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 10 | 656 | 682 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.32 | 663 | 684 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1090 aa Download sequence Send to blast |
MPPSSDRRRG GGPVATASRM WRPRYAAPAP DGAAPILPIP TPAPEARPRH RRPNHGNNGD 60 NRRPAPSQEQ NGDAGHHRHG APTERPAAAA RETRADGAVP QLVQEIQDKL ARGAVECMIC 120 YDMVRRSAPV WSCGSCFSIF HLPCIRKWVR SPASAADASP AAADPASASP SWRCPGCQFV 180 YATPARDLAY TCFCGRRRDP PNDHFLTPHS CGEPCSRPLE RAEPPGAKGE DADATRCPHV 240 CVLQCHPGPC PPCKAFAPDR PCPCGKQIIV RRCADRSTPV TCGRPCQQML TCRRHRCEKV 300 CHTGSCGDCD VLISARCFCG KKNEALLCGD MVVKGKLSEE DGLFSCSEVC GRTLACGNHA 360 CKDMCHPGSC GECELMPGKV TTCHCGKTRL QETRASCLDA IPTCDKICDK KLTCGVHRCK 420 VNCHDGECPP CLVRVEQKCR CGSSAQMVEC YKVSMEEFRC NKPCGCKKNC GRHRCSELCC 480 PLSRKFAQLE GGDWDPHLCQ ISCGKKLRCG QHSCQLLCHS GHCPPCLETI FTDLTCACGR 540 TSLPPPLPCG TPTPSCSHQC SVPQPCGHPA SHSCHFGDCP PCVVPVMREC IGGHVMLRNI 600 PCGSKDIRCN QPCGKNRQCG VHACNRPCHP PPCDQPPANG DASSSSGGKA SCGQVCGAAR 660 RECKHTCTAP CHPSSQCPDL RCEFAVTITC SCGRINATVP CGAGGASMGD NLFEVSIIQK 720 LPMPLQPVES NGRKVPLGQR KLSCDEECAK MEKKRVLAEA FDITPPNLDA LHFGENSSSS 780 DLVADLFRRE PKWVLAIEER CKFLVLGKVR GSSSSNLKLH VFCHMLKDKR DAISLIANRW 840 KLSVQVAGWE PKHFVIIHVT PKSKPPARIL GSKPGAPVTA AHPYFDPLVD MDPRMVVAML 900 DLPRDADVTA LVLRFGGECE LIWLNDKNAI AVFNDPTRAA TALRRLDYGS GYQGAVMFMP 960 SSAQASSSGN VWIGGQKDGG LAARSNPWKK PASAEPDMSS GDRTGVAGHA PAPGWRGANT 1020 TSRVMETPNR WNVLESDAAA SSVPGNEWRR AVPCTDASYS AIPNAGNAGP SVTKLQPDVD 1080 VDDWEEACE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.7104 | 0.0 | panicle |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G354301.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454823.2 | 0.0 | NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A1Z5RQJ9 | 0.0 | A0A1Z5RQJ9_SORBI; Uncharacterized protein | ||||
STRING | Sb04g038100.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6130 | 35 | 43 | Representative plant | OGRP3950 | 14 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G354301.1.p |
Entrez Gene | 8055351 |