PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G342200.1.p
Common NameSb04g036955, SORBIDRAFT_04g036955
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 399aa    MW: 43833.2 Da    PI: 6.9412
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G342200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.67.7e-25243287145
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                           kprlrWtpeLHerFv+av++LGGsekAtPk++ ++mkv+gLt++h
  Sobic.004G342200.1.p 243 KPRLRWTPELHERFVDAVNKLGGSEKATPKAVQKVMKVEGLTIYH 287
                           79******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-21241287IPR009057Homeodomain-like
SuperFamilySSF466896.09E-10242289IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-16243286IPR006447Myb domain, plants
PfamPF002493.3E-6245285IPR001005SANT/Myb domain
PfamPF143793.6E-15321363IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGTACSHTST MNRLHSGRVP PCLSSAITLV PAFSEVSFPS FPEQRLSFVE RELPISSVTS  60
FDTSMAAPDT MSTHLASSFT NESPNGQLCS GSYVTEPCDP DTPLLATHSS LMGNSRPLVM  120
DFPEISEQIC SNQEQLLGLF DYPASVDCSK SKNVTTFGQQ VQATITVDPN THLTSQNEWF  180
SSGSPMQLQK NVGSAESVLK TVDARSATPQ NYLFCHTQRS VPDPFNCDRL GADSLPSSNT  240
APKPRLRWTP ELHERFVDAV NKLGGSEKAT PKAVQKVMKV EGLTIYHKYR TVQHRSDGVS  300
GRSGKADEDS IPQSKGKGNV EGVMAQIGLQ KQLHEQLEIQ RKLQLQVEEH SKYLETVIAK  360
QKESLKKLGA LRGFRDQVRQ ILKDGEAPEE WTHSAQQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-20243295260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-20243295260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-20243295260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-20243295260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-20243295260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-20243295260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-20243295260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-20243295260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G342200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454768.20.0protein PHOSPHATE STARVATION RESPONSE 2 isoform X2
TrEMBLC5XV970.0C5XV97_SORBI; Uncharacterized protein
STRINGSb04g036955.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54942526
Representative plantOGRP1611433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.13e-36phosphate starvation response 1