PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G338800.1.p | ||||||||
Common Name | Sb04g036640, SORBIDRAFT_04g036640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 304aa MW: 33740 Da PI: 7.1721 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.4 | 1.7e-50 | 10 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrF P+deelv++yL+ kv++++l + + + evd++++ePw+Lp +k +++ewyfFs rd+kyatg r+nratksgyWkatgk Sobic.004G338800.1.p 10 LPPGFRFYPSDEELVCHYLHGKVANERLAGAGAaMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKATGK 98 79*************************8776666***************87788999******************************** PP NAM 89 dkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128 d+ +++ +++ vg++ktLvfy+grap+g kt+Wvmhe+r+ Sobic.004G338800.1.p 99 DRVIHNPragghhhHRAIVGMRKTLVFYRGRAPNGIKTSWVMHEFRM 145 *****9988777666666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-59 | 7 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.452 | 10 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-27 | 11 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MGLRDIELTL PPGFRFYPSD EELVCHYLHG KVANERLAGA GAAMVEVDLH THEPWELPDV 60 AKLSTNEWYF FSFRDRKYAT GLRTNRATKS GYWKATGKDR VIHNPRAGGH HHHRAIVGMR 120 KTLVFYRGRA PNGIKTSWVM HEFRMENPHT PPKEDWVLCR VFYKKKADAM DYAMADSEQD 180 VGMHMPRGGA DSSSYSPPPF PALGGSHFHH HHLTPLTDHH GGGCLNNEFP GMAALLQHNN 240 GMFDPHVVQP HLHDSVVLAG PPAAAAAAGS TRDGGEQCGS GVLMDLGLDE HYTYNSYNSL 300 LQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-47 | 1 | 169 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-47 | 1 | 169 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-47 | 1 | 169 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-47 | 1 | 169 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-47 | 1 | 169 | 7 | 172 | NAC domain-containing protein 19 |
3swm_B | 4e-47 | 1 | 169 | 7 | 172 | NAC domain-containing protein 19 |
3swm_C | 4e-47 | 1 | 169 | 7 | 172 | NAC domain-containing protein 19 |
3swm_D | 4e-47 | 1 | 169 | 7 | 172 | NAC domain-containing protein 19 |
3swp_A | 4e-47 | 1 | 169 | 7 | 172 | NAC domain-containing protein 19 |
3swp_B | 4e-47 | 1 | 169 | 7 | 172 | NAC domain-containing protein 19 |
3swp_C | 4e-47 | 1 | 169 | 7 | 172 | NAC domain-containing protein 19 |
3swp_D | 4e-47 | 1 | 169 | 7 | 172 | NAC domain-containing protein 19 |
4dul_A | 3e-47 | 1 | 169 | 4 | 169 | NAC domain-containing protein 19 |
4dul_B | 3e-47 | 1 | 169 | 4 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.12922 | 0.0 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G338800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964973 | 0.0 | EU964973.1 Zea mays clone 282884 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454749.1 | 0.0 | NAC domain-containing protein 92 | ||||
TrEMBL | C5XV73 | 0.0 | C5XV73_SORBI; Uncharacterized protein | ||||
STRING | Sb04g036640.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 4e-79 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G338800.1.p |
Entrez Gene | 8084681 |