PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G336700.1.p
Common NameSb04g036450, SORBIDRAFT_04g036450
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 293aa    MW: 32164.3 Da    PI: 6.4082
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G336700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.81.4e-165096455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           hn  E+rRR+riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  Sobic.004G336700.1.p 50 VHNLSEKRRRSRINEKMKALQTLIPNS-----SKTDKASMLDDAIEYLKQLQ 96
                          6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-2043106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-2044106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.9814695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.72E-1649100No hitNo description
PfamPF000103.8E-145096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1852101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDAQQQQLDL VMRHQSMATV YESEDALGSS ESDPARPARP RGKRSRAAEV HNLSEKRRRS  60
RINEKMKALQ TLIPNSSKTD KASMLDDAIE YLKQLQLQVQ MLSMRNGLYL PPGNLSGVPE  120
ALASSEMCAA LNQSGAKASN SGAVVLPGNQ IPVARLLFDL PNHDQRHENP LVLQSVPSSS  180
TAVEPQFLQE PAQPNLQSFQ LALPPEMLFK EDMMLEHRLT SAQETTSLPG HEAKPGRQEA  240
RMVNSDLFDR GSLGKERAQD LMPKNTESVL FMPYLHSLQS GDAEGSLRAG SN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G336700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0333820.0BT033382.1 Zea mays full-length cDNA clone ZM_BFb0041N16 mRNA, complete cds.
GenBankBT0640560.0BT064056.1 Zea mays full-length cDNA clone ZM_BFc0135E23 mRNA, complete cds.
GenBankKJ7269880.0KJ726988.1 Zea mays clone pUT3689 bHLH transcription factor (bHLH168) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454736.20.0transcription factor PIF5 isoform X1
TrEMBLA0A194YST90.0A0A194YST9_SORBI; Uncharacterized protein
STRINGSb04g036450.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.13e-34bHLH family protein