PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G330900.1.p
Common NameSb04g035980, SORBIDRAFT_04g035980
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARR-B
Protein Properties Length: 676aa    MW: 73136.2 Da    PI: 6.3491
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G330900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.62.7e-28212265155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Sobic.004G330900.1.p 212 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVERLTRENVASHLQKYRL 265
                           79*******************.********************************8 PP
2Response_reg77.83.8e-26231311109
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                           vl vdD+p+ +++l+++l++ +y +v+++ ++  al++l++++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++ 
  Sobic.004G330900.1.p  23 VLAVDDDPVCLKVLENLLRRCQY-RVTTTNQAVVALRMLRQNRdlFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVM 109
                           799********************.***************99999********************87754.558**************** PP

                           HHHHTTESEEEESS--HHHHHH CS
          Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                           + +  Ga d+l Kp+  eel++
  Sobic.004G330900.1.p 110 KGITHGACDYLLKPVRLEELRN 131
                           ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.1E-1851675IPR017053Response regulator B-type, plant
SuperFamilySSF521721.41E-3420145IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.6E-4120175No hitNo description
SMARTSM004484.5E-3121133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.42722137IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-2323132IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.05E-2624136No hitNo description
PROSITE profilePS5129412.827209268IPR017930Myb domain
SuperFamilySSF466891.13E-19210269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-30210270IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-25212265IPR006447Myb domain, plants
PfamPF002491.5E-6214264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MRPEERNAAV GRVRDQFPVG MRVLAVDDDP VCLKVLENLL RRCQYRVTTT NQAVVALRML  60
RQNRDLFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS VNGETKTVMK GITHGACDYL  120
LKPVRLEELR NIWQHVVRRK FSNCERANID GYEECTRPSN ADFDHVHSQI TGGTPDQSGR  180
SSKKRKEYHS EEEDEGEESN GQENDDPSAP KKPRVVWSVE LHRKFVAAVN QLGIDKAVPK  240
RILELMNVER LTRENVASHL QKYRLYLKRL SAVASQQASI VAAFGGNDPF MRMGAFEGLQ  300
GYQSFASSAA LPSFTPQGLL NRNSPTSFAL QGMSASRPIQ IASNSTISHS ISDPNKYHLS  360
LPGTSSRQGN LAQGLTTSVG QVQLPQKWIH EETDDLSTIL SVSGQANNGV PGTLQSVTNS  420
HLLQQGLVEC RQDKVVIQPC SSASSDRLEG TVGVSSSLMD SCASQQNVVP LSAFSISASP  480
MNGSLCSNGV AELGATSSVG TNICPSNDLR VARDNNVGAS SFGSVILLSP DTVPNQKYLN  540
FGGGSNLRQS MDGGNTDNLL NSKLIWSCLP TSQPSNLVGS HHPMSQRLNN GNLGGTMVGQ  600
TTAAAPQTRI DMFTSGDTPT PKSASDLSFP KVHSELSSSS CSFDGLLNSI IKVEKDDASF  660
SDDLGCDFYS LGACI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-25208271164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.63700.0ovary| panicle| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G330900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9456060.0EU945606.1 Zea mays clone 279188 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454708.10.0two-component response regulator ORR23
SwissprotQ6K8X60.0ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLC5XUH10.0C5XUH1_SORBI; Two-component response regulator
STRINGSb04g035980.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-109response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]