PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G329800.1.p
Common NameSb04g035890, SORBIDRAFT_04g035890
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 394aa    MW: 39536 Da    PI: 5.6107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G329800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-12206251555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Sobic.004G329800.1.p 206 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 251
                           99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.28E-13199255No hitNo description
SuperFamilySSF474594.58E-17199261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16202260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9206251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MQPSGREMQG GGGQDDFFDQ MLSTLPAAWS DLGSGKSPWE LPAGAGAVPE DAAAYDEAAL  60
LASRLRHHQI GGGGAGAGEK PLMLHLSDLH GLGGGGAGDD AGFMPLPLFT DRARDDMDAA  120
FKSPNATGAD QALYNGFGAA GMHAAVHQPP FGQGGSMPAA QSFGGGAAAA GGAPAPAAGA  180
ASAGGGAAPP RQQRQRAKRG QATDPHSIAE RLRRERIAER MKALQELVPN ANKTDKASML  240
DEIIDYVKFL QLQVKVLSMS RLGGATAVGP LVASMASEGN GNGNGTSDSG NGNAANGENG  300
GGSLQVTEQQ VARLMEEDMG TAMQYLQGKG LCLMPISLAS AISSATSSSL LSRPSMGAMG  360
GARGPLHDGG SPASPPLVNG GDDSRTIKDG GKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210215RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G329800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697790.0EU969779.1 Zea mays clone 335593 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452977.10.0transcription factor bHLH82 isoform X1
SwissprotQ9ZUG92e-72BH066_ARATH; Transcription factor bHLH66
TrEMBLC5XUG10.0C5XUG1_SORBI; Uncharacterized protein
STRINGSb04g035890.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-40LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]