PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G321300.1.p | ||||||||
Common Name | Sb04g035160, SORBIDRAFT_04g035160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 369aa MW: 40090.2 Da PI: 4.5615 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.4e-18 | 114 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r ++ +g+W+AeIrdp + r++lg+f ++eeAa+a++a +++++g Sobic.004G321300.1.p 114 QYRGIRKRP-WGKWAAEIRDPQ----KgVRVWLGTFNSPEEAARAYDAEARRIRG 163 69*******.**********94....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.9E-21 | 114 | 172 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 114 | 172 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.81E-31 | 114 | 173 | No hit | No description |
SMART | SM00380 | 1.1E-34 | 114 | 177 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.802 | 114 | 171 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-11 | 115 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 115 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MCGGAILDDL REPELRRVTD RDIWQKKKPK RGGGGGRRSF AAEDHEDFEA DFADFEADSG 60 DSDLELGEGA DDDVVEIKPF AAKGTFSGDG LSTMTTADYD APVARSAKRK RKNQYRGIRK 120 RPWGKWAAEI RDPQKGVRVW LGTFNSPEEA ARAYDAEARR IRGKKAKVNF PDAPAVGQKR 180 RSGSASAKAP KSSVEQKPVV KAPMTNLANT NASFYQSVNY PSNNPFVQHA NMPFVPAMNF 240 TASVEDPIMN LHSDQGSNSF GCSDLAWEND TKTPDITSIA PISTIAEGDE SAFVNSNSNS 300 SMLPPVLENS AVDFTDGLTD LESYMRFLLD GGASDSVDSL LNLDGSQDVG SNMDLWSFDD 360 MPIAGDFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-18 | 113 | 171 | 4 | 63 | ATERF1 |
3gcc_A | 1e-18 | 113 | 171 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 121 | KRKRKNQYRGIRKRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.1085 | 0.0 | callus| root| shoot |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G321300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT043270 | 0.0 | BT043270.1 Zea mays full-length cDNA clone ZM_BFc0138G02 mRNA, complete cds. | |||
GenBank | KJ727591 | 0.0 | KJ727591.1 Zea mays clone pUT5451 AP2-EREBP transcription factor (EREB90) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454666.1 | 0.0 | ethylene-responsive transcription factor 1 | ||||
Swissprot | Q6K7E6 | 1e-162 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | C5XTP7 | 0.0 | C5XTP7_SORBI; Uncharacterized protein | ||||
STRING | Sb04g035160.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 2e-37 | related to AP2 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G321300.1.p |
Entrez Gene | 8082696 |