PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G319700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 24955.6 Da PI: 5.2874 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.6 | 4.2e-15 | 21 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++kGVr +k +g+Wv+eIr p++ r r++lg+++ +++Aa+a +aa +l+g Sobic.004G319700.1.p 21 KFKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDAPDKAARAFDAAFVCLRG 70 89****999.**********933...5*********************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-25 | 20 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.101 | 21 | 81 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.8E-8 | 21 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.60E-23 | 21 | 83 | No hit | No description |
SuperFamily | SSF54171 | 6.08E-17 | 21 | 83 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-27 | 21 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-8 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-8 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSSSPETEAA SSSSSSSSSR KFKGVRKRKW GKWVSEIRLP NSRERIWLGS YDAPDKAARA 60 FDAAFVCLRG RGAAGADLNF PDSPPPCRAG GCSSDPREVQ AAALSHANRA AVTAQQAAAA 120 LIMDADADIG GGCGSAPPWD YYYSVAHDAG GGVVLGGGAA TSAAEVVAPV RADGSIDWRP 180 VMAHPPPLFS PTGWGSNAYD FLQVPPPAAA VVDEDMDDGI HGASASLWSF DSRDSYFRY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 28 | KGVRKRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G319700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021315850.1 | 1e-171 | dehydration-responsive element-binding protein 1I | ||||
TrEMBL | A0A194YSQ6 | 1e-169 | A0A194YSQ6_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G097081_P01 | 1e-129 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-22 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G319700.1.p |