PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G317000.2.p | ||||||||
Common Name | Sb04g034800, SORBIDRAFT_04g034800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GRF | ||||||||
Protein Properties | Length: 394aa MW: 42572.4 Da PI: 8.1569 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.9 | 9.6e-25 | 89 | 132 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e Sobic.004G317000.2.p 89 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 132 79***************************************998 PP | |||||||
2 | QLQ | 58 | 2.8e-20 | 18 | 52 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yK+La+++P+P++L+ +++ Sobic.004G317000.2.p 18 PFTASQWQELEHQALIYKCLASGKPIPSYLMPPLR 52 9******************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.1E-11 | 17 | 53 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.7E-14 | 18 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.814 | 18 | 53 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.573 | 89 | 133 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.1E-20 | 90 | 132 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MMMMSGRAGG GATAGRYPFT ASQWQELEHQ ALIYKCLASG KPIPSYLMPP LRRILDSALA 60 TSPSLAFPPQ PSLGWGCFGM GFSRKPDEDP EPGRCRRTDG KKWRCSKEAY PDSKYCEKHM 120 HRGKNRSRKP VEMSLATPAP ASAVSSATSA TAAAAAATTT TSSPAPSYRP APTSHDASPY 180 HALYGGGSPY SASARPAGGP GPYHHPAQVS PFHLHLETTH PHPPPSYYSV DQRDYAYGHA 240 TKEVVGEHAF FSDGAAERDR QHAAGQWQFK QLGMDTKPSP TSLFPVAGYG NGAGASPYGV 300 DLGAKEDDEE ERRRQQQQHC FVLGADLRLE RPSSGHDAAT AQKPLRPFFD EWPHEKGNKG 360 GSWMGLDGET QLSMSIPMAA SDLPVTSRYR NDE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.4254 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G317000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF184748 | 0.0 | KF184748.1 Saccharum hybrid cultivar R570 clone BAC 035B09 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454651.1 | 0.0 | growth-regulating factor 1 isoform X2 | ||||
Swissprot | Q6AWY8 | 1e-173 | GRF1_ORYSJ; Growth-regulating factor 1 | ||||
TrEMBL | C5XTK5 | 0.0 | C5XTK5_SORBI; Uncharacterized protein | ||||
STRING | Sb04g034800.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 5e-49 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G317000.2.p |
Entrez Gene | 8081935 |