PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G312200.1.p
Common NameSb04g034440, SORBIDRAFT_04g034440
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 579aa    MW: 61315.4 Da    PI: 4.8583
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G312200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.4e-30318377159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Sobic.004G312200.1.p 318 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 377
                           58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31303379IPR003657WRKY domain
SuperFamilySSF1182903.01E-27311379IPR003657WRKY domain
PROSITE profilePS5081128.529313379IPR003657WRKY domain
SMARTSM007741.4E-37318378IPR003657WRKY domain
PfamPF031061.0E-26319377IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MSSKKKRAAI DLSLEVERSD EDHGSGGRGK GDRRRGKDDG EVDKKEEQFK EQGEEPKEET  60
GEEEKVVVEV VVDQGGDGTK EIKYRTQQGE EMEDDKQSPA DAHGDGESDG AEARAQDKHV  120
VEAAGNGDGG DDSYTTMVQD EVSAMQEEME KMKEENRMLR RVVDRTVRDY YELQKKVEAC  180
YQQQQADEPK EPEVFLSLGA TAAGTGGAFP EPKRKERQAA RRPSVGSDDT DDDDAKEDLG  240
LSLSLRASSY EEEKLEAGHD DVEGASVVGA DDGKAKGYTL LESSKLGAPA AGITSQSVNP  300
ANRKTRVSVR VRCQGPTMND GCQWRKYGQK VAKGNPCPRA YYRCTVAPGC PVRKQVQRCL  360
EDMSILVTTY EGTHNHPLPV GATAMASTTS AAATFMLLSS TTSSSSISEA GGGSAAPPYL  420
STPYLLNSTS HHSAASPLLS APPSSSMPSS TPGAASGVQH LNMFGHSSSM LAQQAPHFGS  480
NSKYPWSSDP LQGMGGGGGL PAGSKRPFWS TGGDEKTATL PDNVGAVMAD PSKFSVAIAA  540
AINSYMGKDG QVVGGKDGES SSSKSSNKWG VVESLPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-213183791777Probable WRKY transcription factor 4
2ayd_A4e-21305381176WRKY transcription factor 1
2lex_A4e-213183791777Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.91880.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G312200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3632472e-91AK363247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013L09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452890.10.0probable WRKY transcription factor 9
TrEMBLC5XSY10.0C5XSY1_SORBI; Uncharacterized protein
STRINGSb04g034440.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-51WRKY DNA-binding protein 9