PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G309600.1.p
Common NameABF1, Sb04g034190, SORBIDRAFT_04g034190
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 347aa    MW: 37551 Da    PI: 9.7734
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G309600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.77.2e-15266318556
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk.eleelkkev 56 
                           +r+rr++kNRe+A rsRqRK+a++ eLe +v++L++ N++L+k ++e+l+k+ 
  Sobic.004G309600.1.p 266 RRQRRMIKNRESAARSRQRKQAYMMELEAEVAKLKEMNDELQKkQVEMLEKQK 318
                           79**************************************9641577777764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.4E-14261321No hitNo description
SMARTSM003382.0E-13262327IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.932264309IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.34E-10266316No hitNo description
CDDcd147077.63E-24266318No hitNo description
PfamPF001702.0E-12266319IPR004827Basic-leucine zipper domain
PROSITE patternPS000360269284IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MNFPGGSGRR QQQEPEHLPP MTPLPLARQG SVYSLTFDEF QSSLGGAAKD FGSMNMDELL  60
RSIWSAEEIH NVAAANASAA DHAHAARASS IQRQGSLTLP RTLSQKTVDE VWRDLVCVGG  120
GPSAEAAAPP PPAQRQPTLG EITLEEFLVR AGVVREDMTA PPPVLPAPVC PPPPPQQTML  180
FPHGDVFAPL VPPLQFGNGL VSGAVGQQQG GGPAAPAVSP RPVTASGFGK MEGDDLSSLS  240
PSPVPYVFGG GLRARKPPAM EKVVERRQRR MIKNRESAAR SRQRKQAYMM ELEAEVAKLK  300
EMNDELQKKQ VEMLEKQKNE VLERMRRQVG PTAKRICLRR TLTGPW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.118030.0ovary| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. {ECO:0000269|PubMed:18931143}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates abscisic acid (ABA) signaling (PubMed:18931143, PubMed:19947981, PubMed:27424498, PubMed:27325665). Can regulate the expression of a wide spectrum of stress-related genes in response to abiotic stresses through an ABA-dependent regulation pathway. Confers ABA-dependent drought and salinity tolerance (PubMed:18931143, PubMed:27325665). Binds specifically to the ABA-responsive elements (ABRE) in the promoter of target genes to mediate stress-responsive ABA signaling (PubMed:27325665, PubMed:27424498). {ECO:0000269|PubMed:18931143, ECO:0000269|PubMed:19947981, ECO:0000269|PubMed:27325665, ECO:0000269|PubMed:27424498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G309600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) (PubMed:18315698, PubMed:18931143). Induced by drought, salt and osmotic stresses (PubMed:18931143). {ECO:0000269|PubMed:18315698, ECO:0000269|PubMed:18931143}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7765170.0KF776517.1 Sorghum bicolor genotype Halepense ABA responsive element binding factor 1 (ABF1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454604.10.0bZIP transcription factor 23
RefseqXP_021314694.10.0bZIP transcription factor 23
SwissprotQ6Z3121e-154BZP23_ORYSJ; bZIP transcription factor 23
TrEMBLC5XSV40.0C5XSV4_SORBI; ABA responsive element binding factor 1
STRINGSb04g034190.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70638147
Representative plantOGRP5401580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34000.22e-40abscisic acid responsive elements-binding factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang Y,Tang N,Du H,Ye H,Xiong L
    Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice.
    Plant Physiol., 2008. 148(4): p. 1938-52
    [PMID:18931143]
  3. Shen J,Xie K,Xiong L
    Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses.
    Mol. Genet. Genomics, 2010. 284(6): p. 477-88
    [PMID:20941508]
  4. Luo C,Guo C,Wang W,Wang L,Chen L
    Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice.
    Plant Cell Rep., 2014. 33(2): p. 323-36
    [PMID:24247850]
  5. Sakuraba Y, et al.
    Rice ONAC106 Inhibits Leaf Senescence and Increases Salt Tolerance and Tiller Angle.
    Plant Cell Physiol., 2015. 56(12): p. 2325-39
    [PMID:26443376]
  6. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]
  7. Dey A,Samanta MK,Gayen S,Sen SK,Maiti MK
    Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.
    PLoS ONE, 2016. 11(3): p. e0150763
    [PMID:26959651]
  8. Zong W, et al.
    Feedback Regulation of ABA Signaling and Biosynthesis by a bZIP Transcription Factor Targets Drought-Resistance-Related Genes.
    Plant Physiol., 2016. 171(4): p. 2810-25
    [PMID:27325665]
  9. Dey A,Samanta MK,Gayen S,Maiti MK
    The sucrose non-fermenting 1-related kinase 2 gene SAPK9 improves drought tolerance and grain yield in rice by modulating cellular osmotic potential, stomatal closure and stress-responsive gene expression.
    BMC Plant Biol., 2016. 16(1): p. 158
    [PMID:27411911]
  10. Gui J, et al.
    OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice.
    Dev. Cell, 2016. 38(2): p. 201-13
    [PMID:27424498]