PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G303600.1.p
Common NameSb04g033680, SORBIDRAFT_04g033680
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB
Protein Properties Length: 306aa    MW: 32354.7 Da    PI: 5.5368
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G303600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151562148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W++eEd++l d++ ++G g+W++ +++ g++R +k+c++rw +yl
  Sobic.004G303600.1.p 15 KGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLHRNGKSCRLRWINYL 62
                          678*******************************************97 PP
2Myb_DNA-binding57.14.2e-1869113248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           g +++eE+e    +++ lG++ W++Iar+++ gRt++++k++w++yl
  Sobic.004G303600.1.p  69 GTFSPEEEETVMSLHATLGNK-WSRIARHLP-GRTDNEVKNHWNSYL 113
                           78*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.041062IPR017930Myb domain
SuperFamilySSF466895.87E-2912109IPR009057Homeodomain-like
SMARTSM007171.8E-121464IPR001005SANT/Myb domain
PfamPF002491.6E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-211668IPR009057Homeodomain-like
CDDcd001671.49E-101862No hitNo description
PROSITE profilePS5129426.86863117IPR017930Myb domain
SMARTSM007177.8E-1667115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-2669116IPR009057Homeodomain-like
PfamPF002491.9E-1669113IPR001005SANT/Myb domain
CDDcd001672.21E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGCKACDKPK PNYRKGLWSP EEDQKLRDYI LLHGHGCWSA LPAKAGLHRN GKSCRLRWIN  60
YLRPGLKHGT FSPEEEETVM SLHATLGNKW SRIARHLPGR TDNEVKNHWN SYLKKRVEGK  120
EGRPSTPAPA AATDSGTDSD DSHCVKPGDG GAAQEAPADS GSSEPRESSS ADSSCLTDPP  180
AACRPHALVA APKVMFADWL DTDYYMGCGG GGGGGGPPPA VAAPGLGAAA AAGVDRDQQH  240
QVMSQGSVQQ VDGPSGVDVS SLHGFGDSGA SCWEFQENFD DGIDDQLQTA GFCDLLSMSD  300
YFGLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26111183109B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed specifically in guard cells (PubMed:16005292). Expressed in sink tissues, such as xylem, roots and developing seeds (PubMed:22708996). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:22708996}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G303600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794120.0HF679412.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB6 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454571.10.0transcription factor LAF1
SwissprotQ8VZQ24e-52MYB61_ARATH; Transcription factor MYB61
TrEMBLC5XSP80.0C5XSP8_SORBI; Uncharacterized protein
STRINGSb04g033680.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.16e-56myb domain protein 19
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]