PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G301100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GATA | ||||||||
Protein Properties | Length: 478aa MW: 49752.3 Da PI: 8.1872 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.9 | 3.3e-19 | 371 | 405 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l Sobic.004G301100.1.p 371 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 405 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.2E-17 | 365 | 419 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.347 | 365 | 401 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-14 | 367 | 428 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.3E-15 | 369 | 403 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.38E-15 | 370 | 427 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 371 | 396 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.5E-17 | 371 | 405 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MTHQTTLLIA STLAAAFSPA SHHAGSSPLF FTRSSSSSSC SPPAMASFVA HHHGSLLERE 60 GMMSSALALR SSLRPCEAAA DEVAAAGPAA ADRGVAVFAD EFSVEDLLDL EDLCEVDNDC 120 CAELGGDAAP APGAVEDEDK LSSDSHGSSS VVSYELMTLP VPHQMIDLPL PAHDAEELEW 180 VSRIMDDSLA ELPPPPKLPA AALGPTAVRR PLLEGAAAAG PAMRRSPTPT ICALSTEALV 240 PVKAKRSKRS RASVWSLSGG GAGAPLSEST TSSSSTTTTS SCTSSSASFS PLLLLPAADS 300 SPLLLSSSQL LVDETTPRPP KKKSKHGKHG SKSGGKPKKR GRKPKKHHPR PPQFGGAGSA 360 PATAQQGDRR CSHCGVQKTP QWRAGPEGAK TLCNACGVRY KSGRLLPEYR PACSPTFESS 420 IHSNSHRKVL EMRRKKEGED GLGPLLPPVP AAAPLGLGPA VVRPTQYIFS SLPGWNY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.7540 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G301100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021313901.1 | 0.0 | GATA transcription factor 6-like | ||||
TrEMBL | A0A194YSE8 | 0.0 | A0A194YSE8_SORBI; Uncharacterized protein | ||||
STRING | Sb04g033450.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1417 | 33 | 108 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 2e-39 | GATA transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G301100.1.p |