PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G297100.1.p
Common NameSb04g033105, SORBIDRAFT_04g033105
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 312aa    MW: 32426.2 Da    PI: 5.3976
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G297100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.25e-19159209255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrdp +ng  +r++lg++++ae+Aa a+++a+ +++g
  Sobic.004G297100.1.p 159 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYDSAEDAAVAYDRAAYRMRG 209
                           8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.84E-28158217No hitNo description
Gene3DG3DSA:3.30.730.102.8E-31158217IPR001471AP2/ERF domain
SMARTSM003804.8E-38159223IPR001471AP2/ERF domain
PfamPF008479.7E-13159209IPR001471AP2/ERF domain
PROSITE profilePS5103223.999159217IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-23159219IPR016177DNA-binding domain
PRINTSPR003676.4E-13160171IPR001471AP2/ERF domain
PRINTSPR003676.4E-13199219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MLLLNPACEA AALDTIRHHL LDEPAASSVS MSAAPPRPVY CRSTSFGSLV ADQWSESLPF  60
RPDDADDMVV FGALRDAFSR GWLPDGSFAA VKPEPLASSP DDDSSPYDHG SYSYLGGGAV  120
GGLLRAAEEP ETPTEAAAMT PGTASEEEAA VAVAGRGKHY RGVRQRPWGK FAAEIRDPAK  180
NGARVWLGTY DSAEDAAVAY DRAAYRMRGS RALLNFPLRI SSEIAAAITA AAPAPAVGDK  240
RASPEPTASS DSSSPSSSSS SGTPKRRKRG EAAAATMAMA LVPPPPAQAP VQLTLPAHPW  300
FAAGPVQQLV S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-38156222268ATERF1
3gcc_A2e-38156222268ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.168680.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed, mostly in flowers and rosettes after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G297100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277141e-178KJ727714.1 Zea mays clone pUT5653 AP2-EREBP transcription factor (EREB195) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452817.10.0ethylene-responsive transcription factor 2
SwissprotO803371e-51EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLC5XS010.0C5XS01_SORBI; Uncharacterized protein
STRINGSb04g033105.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.18e-27ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]