PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G296900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 343aa MW: 36223.4 Da PI: 6.513 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.3 | 2.5e-20 | 152 | 203 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+++g r++lg+++ta eAa+a+++a+ +++g+ Sobic.004G296900.1.p 152 KYRGVRQRP-WGKFAAEIRDPKKRG--SRVWLGTYDTAIEAARAYDRAAFRMRGA 203 8********.***********8876..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-32 | 151 | 211 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-14 | 152 | 202 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-22 | 152 | 211 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.25 | 152 | 210 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.65E-31 | 152 | 211 | No hit | No description |
SMART | SM00380 | 8.5E-38 | 152 | 216 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-13 | 153 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-13 | 192 | 212 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MDFSGEIDDF SLQLIREQLL GGEACLPVVP NAAAYSGLSV HPTQAAFHQH AAAFLPQHQQ 60 QQVAYVDLTN EYAADAATAA SHGEAAAFRA EPVMIRFGGE PSPVSDPSRR PMLTISLPPT 120 SHAWGPAGAV EVQVQAQAAA AAALVDVNDF RKYRGVRQRP WGKFAAEIRD PKKRGSRVWL 180 GTYDTAIEAA RAYDRAAFRM RGAKAILNFP NEVGSRGADF LAPPPPPPPA QAAATTTSSQ 240 NKRKLPHDAE SEPAANKSVK AEAFGSPASS PATTTTTTTT TTTTAASTVT TCSPSSEATG 300 AHHEVFPMTP SSWTWEQLEG VFGSLSPLSP HPQLGFPEVT VN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-28 | 153 | 215 | 6 | 68 | ATERF1 |
3gcc_A | 5e-28 | 153 | 215 | 6 | 68 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G296900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT084056 | 0.0 | BT084056.1 Zea mays full-length cDNA clone ZM_BFb0069B11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021315889.1 | 0.0 | ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A194YS80 | 0.0 | A0A194YS80_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G057386_P01 | 1e-159 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 2e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G296900.1.p |