PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G295700.1.p
Common NameSb04g032960, SORBIDRAFT_04g032960
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 285aa    MW: 29589.8 Da    PI: 5.9477
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G295700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.5e-1791140255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Sobic.004G295700.1.p  91 TFRGVRMRV-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 140
                           59****999.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-3191149IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2191149IPR016177DNA-binding domain
SMARTSM003806.7E-3791154IPR001471AP2/ERF domain
PROSITE profilePS5103222.81391148IPR001471AP2/ERF domain
PRINTSPR003677.1E-1092103IPR001471AP2/ERF domain
PfamPF008471.8E-1192140IPR001471AP2/ERF domain
CDDcd000181.75E-2992150No hitNo description
PRINTSPR003677.1E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEADALLHAP TTSSSCSDSG GGSCVINGAQ ERLSKTGGKP HKNVKRKRTA SSPPAAPGGV  60
AVAPEATVDD DCGGGGGRQR KRGSAGTRHP TFRGVRMRVW GKWVSEIREP RKKSRIWLGT  120
FPTAEMAARA HDVAALAIKG RAAHLNFPHL AHELPRPAST SPADIQAAAA KAAAAAAAAA  180
DADVEQCESS SHHIAETPSS SSSSAANSEE VAAASNSEES VLLFDFDLPD LLLDLRDGLW  240
SPIWEAAAPA AAAEEYDGDS LSEPLLWAHD HCWMDAAAVP VQPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1885149873Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.75562e-72leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G295700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454539.10.0ethylene-responsive transcription factor ERF042
SwissprotQ8LBQ72e-47ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLC5XRY60.0C5XRY6_SORBI; Uncharacterized protein
STRINGSb04g032960.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]