PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G295600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 265aa MW: 28097 Da PI: 4.7342 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.6e-19 | 76 | 125 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f+t+e+Aa+a++ a+++++g Sobic.004G295600.1.p 76 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFDTPEMAARAHDVAALAIKG 125 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.81E-22 | 76 | 133 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.182 | 76 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-37 | 76 | 139 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 76 | 134 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.1E-13 | 76 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 77 | 88 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.73E-33 | 77 | 134 | No hit | No description |
PRINTS | PR00367 | 1.4E-10 | 99 | 115 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MSLLVTASFA QCSSPTMEEE RALSPVSDAC TTCSSSGAGT TGPNSPVSSS SQSLDDTSGG 60 GSSSRKRPRR ELKHPTYRGV RMRAWGKWVS EIREPRKKSR IWLGTFDTPE MAARAHDVAA 120 LAIKGRAAHL NFPEMSHELP RAASAAPEDV RAAAALAAAM DRRESVAPLP TSSDSSHGAR 180 NDESEEPAAS SSSGNDADDS VQSDEPAAPP SEHSMLVDGH ILDLALFELP DVLLEFGFAL 240 PPPPSSTSCG YDLSWDEPLL LWEH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 74 | 133 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G295600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970180 | 0.0 | EU970180.1 Zea mays clone 341615 dehydration-responsive element-binding protein 1B mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021315933.1 | 0.0 | ethylene-responsive transcription factor ERF043 | ||||
TrEMBL | A0A194YS75 | 0.0 | A0A194YS75_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G041839_P01 | 1e-127 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16750.1 | 7e-38 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G295600.1.p |