PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G294200.2.p
Common NameSb04g032810, SORBIDRAFT_04g032810
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 510aa    MW: 54636.4 Da    PI: 6.7812
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G294200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.5e-051633219
                          EETTTTEEESSHHHHHHH CS
               zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                          +C++Cgk F+++ +L  H
  Sobic.004G294200.2.p 16 VCENCGKEFTSWKSLLDH 33
                          6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551801535IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.4521543IPR007087Zinc finger, C2H2
SuperFamilySSF576678.09E-8184207No hitNo description
PfamPF139123.5E-9185209IPR007087Zinc finger, C2H2
SMARTSM003550.13185207IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221185212IPR007087Zinc finger, C2H2
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
SuperFamilySSF576678.09E-8310337No hitNo description
PfamPF139126.9E-13314338IPR007087Zinc finger, C2H2
SMARTSM003551.6315337IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995315337IPR007087Zinc finger, C2H2
PROSITE patternPS000280317337IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MYSLRTNAGR HKNCRVCENC GKEFTSWKSL LDHGRCSYDR KKDDLNIAGT DIDGEDEEDL  60
TLAAGGWSKG KRTRRTKVIV VDNGPQTDEP LPVPATSREE EDLANCLVML ASSRGDMQPR  120
AVVDVQKQQH ASTSKDERAS AGKDEQRFLV PPQPISMLPP TVPQFKFLAP PQVMPSPPVI  180
SRGLFECKAC KKVFTSHQAL GGHRASHKKV KGCFAAKLEE SSRNNDSPQP SAASSNDNVN  240
KQVVVEAIPA IVDTTESSNG VDGNAEVNNM LLNGRTTAVV AATSAPEMAN TVMQVDEAPS  300
SSTTVSPLKK KGKVHECSIC HRVFMSGQAL GGHKRCHWLT TGAAGGDPTV VAKLQPFAPH  360
QDHHVMHAAM CQQLTLGPPT MYGTSDSCLD LNVPMNQSAD PAATRQAAGI NESMLSLNAP  420
ASLYMHSWTG HTNNDASNMH NDTAATSGHC DLPEATAATE DEADSTSAKR AKISDLKDMN  480
MAGETSPWLQ VGIALPSETT NERLLKPKG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G294200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454531.10.0uncharacterized protein LOC8076228
TrEMBLA0A1Z5RPV70.0A0A1Z5RPV7_SORBI; Uncharacterized protein
STRINGSb04g032810.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Representative plantOGRP2521820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.19e-19C2H2-like zinc finger protein