PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.004G294100.1.p

Common Name

Sb04g032800, SORBIDRAFT_04g032800

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

C2H2

Protein Properties

Length: 338aa MW: 34924.8 Da PI: 6.0392

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.004G294100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	5	26	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++F ++ L H+r+H Sobic.004G294100.1.p 5 TCKLCSRRFASPRALAGHMRSH 26 6********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.305	4	31	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0078	4	26	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	8.02E-6	5	26	No hit	No description
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.5E-5	6	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.02E-6	179	203	No hit	No description
SMART	SM00355	170	184	204	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.0E-7	186	208	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.8E-12	249	271	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.6	249	271	IPR007087	Zinc finger, C2H2
SMART	SM00355	2	249	271	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	251	271	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MAKNTCKLCS RRFASPRALA GHMRSHSIAR AQAAAAAAKQ QISSASSAST SFAAVADEDV 60 GLKTPAASTY GLRENPKRSL RVADAAFSDR ESEAESTPPH AKRVNAAPVW GEPEPASSLS 120 EVSTPEDVAL SLMMLSRDSW PSAVLAEDDG SDDGSDDGYA PPPAPPLPRA PTPAPPPVEK 180 RTQFMCVACK KVFRSYQALG GHRASNVRGG RGGCCAPPPQ PPLSPLPEHR DGDGDEDEDM 240 DMDAKQQPRE CPHCYRVFPS GQALGGHKRS HVCGAAAAAS SLAGTGTATA TASTTSPAAT 300 PPSPINNCPC MIDLNVAPPS EDAELSAVSD PHFNPGA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.13947	6e-33	pollen

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.004G294100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002454530.1	1e-149	zinc finger protein ZAT1
TrEMBL	A0A1Z5RQM2	0.0	A0A1Z5RQM2_SORBI; Uncharacterized protein
STRING	Sb04g032800.1	1e-148	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3518	33	77
Representative plant	OGRP2404	10	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	6e-20	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Sobic.004G294100.1.p
Entrez Gene	8076227