PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G290800.1.p
Common NameSb04g032570, SORBIDRAFT_04g032570
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 717aa    MW: 74276.1 Da    PI: 6.0274
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G290800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS262.61.3e-803587153374
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           + L ++A+a ++g+   a+++Larl+++  p g+p+ R a+y++eAL   la+      +   +  ts+ +++ +laa+k+fs+ sP+l
  Sobic.004G290800.1.p 358 DELAAAAKAAEAGNSIGAREILARLNHQLPPLGKPFLRSASYLKEALLLALAE-----GHHGGCHLTSPLDVALKLAAYKTFSDHSPVL 441
                           7899*************************************************.....666677788888899**************** PP

                  GRAS  92 kfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                           +f+++ta qa+l++++++  +++H+iDfd++ G+QW+++lq+La R+    +  p +++T+++s++s++  el+  ++++a+fA+ lg+
  Sobic.004G290800.1.p 442 QFTNFTATQALLDEIASStsSCIHVIDFDLGVGGQWASFLQELAHRRgaggAALPFVKLTAFVSAASHHPLELRLARDNIAQFAADLGI 530
                           *************999887799************************977555589********************************** PP

                  GRAS 175 pfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                           pf f+++   + +++++ eL   + +E++aV l            +     +++L+lvk+l Pk+v+ +++ ad+ + +F ++fl++++
  Sobic.004G290800.1.p 531 PFGFSAI---SADTINPTELISATgDEVVAVVLPAGCSARA---PP----LPAILRLVKQLAPKIVIAIDHGADRADLPFSQHFLNCFQ 609
                           ******8...7789999998777779*****9999776665...44....556************************************ PP

                  GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                            ++ l+dsl+a  + +++ + k+E++l++++i++ v  +g+       +   Wr+++  aGF pvp s+ a++qa++ll++v+++g++v
  Sobic.004G290800.1.p 610 SCMFLLDSLDAA-GIDADSAGKIEKFLIQPRIEDSVLGRGKV-----DKPIAWRSAFAGAGFAPVPPSSLAEAQADCLLKRVQVRGFHV 692
                           *********888.7899*********************9997.....78899************************************* PP

                  GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                           e+    l+l+W++ +Lv+vSaWr
  Sobic.004G290800.1.p 693 EKCGVGLTLYWQRGELVTVSAWR 715
                           **********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.954330695IPR005202Transcription factor GRAS
PfamPF035144.7E-78358715IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MRAALFGAQR NGAADLVGGG NTLFWPEEGK AKVLLEPRSV LDCTRSPSPN NSTSTLSSSL  60
GGGGGAADST GGVAAVSDSS AAATAAEATK WGAPGEYGGG GKEDWAGGCE LPPIPTGLNM  120
EVIGGSDSWD AMLGSAAAAG QDQTFLNWII GAAGDLDQSG PPLPVHQQPL LDNVGFGFPA  180
ADPLGFSLDP HLGGVASDMS SPGAVSHATN SAGGGNKASS AFGLFSPESA SLQPPPPPVL  240
FHEGIDTKPP LLGAQPPGLL HQYQHQPTPA TTFFMPIPSF PNHNQQSPLV QPPPKRHQSI  300
GDDLYLARNR LLSPPAGQGH AFPPLNGPAP FQLQPSPPPP HGAMKTTAAE AAQQQLLDEL  360
AAAAKAAEAG NSIGAREILA RLNHQLPPLG KPFLRSASYL KEALLLALAE GHHGGCHLTS  420
PLDVALKLAA YKTFSDHSPV LQFTNFTATQ ALLDEIASST SSCIHVIDFD LGVGGQWASF  480
LQELAHRRGA GGAALPFVKL TAFVSAASHH PLELRLARDN IAQFAADLGI PFGFSAISAD  540
TINPTELISA TGDEVVAVVL PAGCSARAPP LPAILRLVKQ LAPKIVIAID HGADRADLPF  600
SQHFLNCFQS CMFLLDSLDA AGIDADSAGK IEKFLIQPRI EDSVLGRGKV DKPIAWRSAF  660
AGAGFAPVPP SSLAEAQADC LLKRVQVRGF HVEKCGVGLT LYWQRGELVT VSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2043171580375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.204310.0embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G290800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0635040.0BT063504.1 Zea mays full-length cDNA clone ZM_BFc0070G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452792.10.0scarecrow-like protein 27
TrEMBLC5Y1F50.0C5Y1F5_SORBI; Uncharacterized protein
STRINGSb04g032570.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-77GRAS family protein