PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G285600.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 491aa    MW: 52474.1 Da    PI: 6.7646
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G285600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000753764091654
                           HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           i +++  L++++ +      +K + a++L ++++YIk L
  Sobic.004G285600.1.p 376 IGEKITALQQIVSPF-----GKTDTASVLFETIKYIKFL 409
                           667888999999887.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.074360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.98E-4375414No hitNo description
Gene3DG3DSA:4.10.280.101.9E-7375418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-9375422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MHLQAGGAVH LHLLQYFMPQ HQPQESATDL EAQESAVCRR SRSSTSPAPA TMWEYHQQAA  60
HAAAALQTAS SPASSFPSWS PYAGTTAALL GSSSAFATDA GSSPPGMRLP AAGEHAVHGH  120
AWSQHGEQSN ITCYKENFLD LLASKNVTQE MFEDVPAGHY AAQAMSGRFG AAGSDVAPIK  180
YEVTAGSSPL FFGSTTAGMH QQGMDMVGCT PRYAYAAADH HQMKEGGGSQ QQELDAAPAM  240
ASFLQQLSSN ASVGMHASLD YSGTGGLDKI CQESRALETS PFGMRSLPDL GSFGGYSRST  300
AESTSSVQPY LRSSNLAETS KQEPDIVSAR SSSSGSGAAS DRKKRASEER TSTVKKSKQE  360
GSKPSPPKQQ VPKVKIGEKI TALQQIVSPF GKTDTASVLF ETIKYIKFLH EQVQLLSEPY  420
TNSSRSKGNH QLPWGDHAHA AAETSKGDEA EHDLRDRGLC LVPVSWTPEV YRDGTAMDYW  480
TPAYRGCLYR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.91720.0shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G285600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9617940.0EU961794.1 Zea mays clone 238269 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452768.20.0uncharacterized protein LOC8073915
TrEMBLC5Y1A90.0C5Y1A9_SORBI; Uncharacterized protein
STRINGSb04g032150.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12698910
Representative plantOGRP1071524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.13e-37bHLH family protein