PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G285400.1.p | ||||||||
Common Name | Sb04g032140, SORBIDRAFT_04g032140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 596aa MW: 61440.8 Da PI: 8.7516 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Sobic.004G285400.1.p 92 FVCEVCNKGFQREQNLQLHRRGH 114 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00084 | 169 | 191 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +++ Sobic.004G285400.1.p 169 WKCDKCSKRYAVQSDWKAHSKVC 191 58*****************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.02E-7 | 91 | 114 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.2E-6 | 91 | 114 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.094 | 92 | 114 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 3.9E-5 | 92 | 114 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0041 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 290 | 134 | 164 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.8E-4 | 157 | 189 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.02E-7 | 164 | 189 | No hit | No description |
SMART | SM00355 | 140 | 169 | 189 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MASNSSAAAV AAMFGIRDAD HQDQMKPLLA QQHQQLLPPA PLLSAAASSS AVSGQATGAS 60 PPPVKKKRNL PADPDAEVIA LSPKTLLATN RFVCEVCNKG FQREQNLQLH RRGHNLPWKL 120 KQKDPAQAQR RRVYLCPEPT CAHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV 180 QSDWKAHSKV CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESARLPPP GLTASHLYGA 240 TSAANMGLSL SQVGSHLAST LGADAHSHHQ DLLRLGGGSA ASRLDHLLGP SNAASAFRPL 300 PPPPSSAFLM GAPQEFAGDG DGTGSHGFLQ GKPFHGLMHL PDLQGNGAGG PSASSAPGLF 360 NLGYIANSAN SSGTSSHGHA SQGHLTSDQF SEGGGGGGGG GGGGGGGSES SAAMLFSGGG 420 NFSGGDHQVA PGGMYNNDPA VMLPQMSATA LLQKASQMGS SASAQGGVSV FGGLVGSSAP 480 SAMHARPPML DQSQMHLQSL MNSLAAGGMF GGANSGSMID PRMYDMDQDV KFNQQGGRGG 540 AEMTRDFLGV GGGGVMRGMT VPRGGHQTDG AAGDMSSLEA EMKSASSPFT GSRMQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 165 | 227 | 3 | 65 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 165 | 227 | 3 | 65 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.17515 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G285400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054258 | 0.0 | BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021315503.1 | 0.0 | protein indeterminate-domain 4, chloroplastic isoform X1 | ||||
Refseq | XP_021315504.1 | 0.0 | protein indeterminate-domain 4, chloroplastic isoform X1 | ||||
Refseq | XP_021315505.1 | 0.0 | protein indeterminate-domain 4, chloroplastic isoform X1 | ||||
TrEMBL | A0A194YS73 | 0.0 | A0A194YS73_SORBI; Uncharacterized protein | ||||
STRING | Sb04g032140.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1733 | 37 | 98 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.2 | 1e-106 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G285400.1.p |
Entrez Gene | 8073914 |