PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.004G284400.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 458aa MW: 45947 Da PI: 9.3998

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.004G284400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.1e-39	158	219	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Sobic.004G284400.1.p 158 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 219 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-25	157	207	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-33	160	216	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	162	216	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	164	200	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MKEKTREGAG SNSTTQAIHR TFLLPRPSHP VVPAVGGSSS SSSSSSSPVV VLSSSSSSPL 60 VGKRNTGESL ARSGIGILAC MDAAQWHQGL GLGKPMEEML MAGNANPNQN PNPPPPAPSA 120 PGAQRAGAPA AGAAAAPSAG ATGGPAGAGT ERRARPQKEK ALNCPRCNST NTKFCYYNNY 180 SLQQPRYFCK TCRRYWTEGG SLRNVPVGGG SRKNKRSSSA VSSAAAASTS AAMSGTVSVG 240 LPAKNPKLMH EGAHDLNLAF PHHNGRALQP PEFPAFPSLE SSSVCNPGAA GMVGNGAAGR 300 GMGALSAMEL LRSTGCYVPL QHVQLGMPAE YAAAGFALGE FRMPPPPQSH SVLGFSLDTH 360 GTGGVGGAGG YSAGLQDSAA GRLLFPFEDL KPAVSAAAGG GGASNGADHH QYEHSKDQAA 420 GDGGSGPSGV TGGHETPGFW SNSLIGNGSS NGGGGPW*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MKEKTREGAG SNSTTQAIHR TFLLPRPSHP VVPAVGGSSS SSSSSSSPVV VLSSSSSSPL  60
VGKRNTGESL ARSGIGILAC MDAAQWHQGL GLGKPMEEML MAGNANPNQN PNPPPPAPSA  120
PGAQRAGAPA AGAAAAPSAG ATGGPAGAGT ERRARPQKEK ALNCPRCNST NTKFCYYNNY  180
SLQQPRYFCK TCRRYWTEGG SLRNVPVGGG SRKNKRSSSA VSSAAAASTS AAMSGTVSVG  240
LPAKNPKLMH EGAHDLNLAF PHHNGRALQP PEFPAFPSLE SSSVCNPGAA GMVGNGAAGR  300
GMGALSAMEL LRSTGCYVPL QHVQLGMPAE YAAAGFALGE FRMPPPPQSH SVLGFSLDTH  360
GTGGVGGAGG YSAGLQDSAA GRLLFPFEDL KPAVSAAAGG GGASNGADHH QYEHSKDQAA  420
GDGGSGPSGV TGGHETPGFW SNSLIGNGSS NGGGGPW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.20287	0.0	callus

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in germinating seeds 3 to 5 days after imbibition. {ECO:0000269\|PubMed:11470159}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.004G284400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582410	0.0	KC582410.1 Sorghum bicolor dof16 protein (dof16) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021315849.1	0.0	dof zinc finger protein DOF4.6 isoform X1
Swissprot	B9F1L8	1e-131	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A194YT63	0.0	A0A194YT63_SORBI; Uncharacterized protein
STRING	Sb04g032040.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	3e-32	Dof family protein

Link Out ? help Back to Top
Phytozome	Sobic.004G284400.1.p

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]