PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G283300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 303aa    MW: 31145.4 Da    PI: 6.4202
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G283300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.8e-1698146356
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                           y+G+r ++ +g+Wv+eIr+p+    + +r++lg++ tae+Aa+a++ a+++l+g+
  Sobic.004G283300.1.p  98 YRGIR-CR-SGKWVSEIREPR----KaRRIWLGTYPTAEMAAAAYDVAARALRGA 146
                           9***9.55.6*********94....36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.6E-2697159IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-1897153IPR016177DNA-binding domain
PROSITE profilePS5103220.17897153IPR001471AP2/ERF domain
CDDcd000183.23E-1798153No hitNo description
Gene3DG3DSA:3.30.730.104.2E-2698153IPR001471AP2/ERF domain
PfamPF008475.6E-998145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAEQPLPRPH SPSTPAAVQV QVQPGPAAAS HQAAPSSGSA PASPRSPSPL LLLLQGGDGG  60
TSSAGAAAAS SVATAPSTTM ATSSGEPSPR SSGKHAFYRG IRCRSGKWVS EIREPRKARR  120
IWLGTYPTAE MAAAAYDVAA RALRGADAVL NFPGAIASRA APASASPADI RAAAAAAAAA  180
AQLEYAQSSQ GTAANHPPPA AARQDHRWHH QQQQHGVMMS GGASATADAA ASLYNTPQQQ  240
QQQQEIGGDE FMDEEAIFEM PQLLRNMAAG MMMSPPRLSP DTSDESPDPS EAGESLWSYH  300
DP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-13941531172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G283300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1693720.0AC169372.2 Sorghum bicolor clone SB_BBc0156J18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314224.10.0ethylene-responsive transcription factor ERF027-like
TrEMBLA0A194YRZ80.0A0A194YRZ8_SORBI; Uncharacterized protein
STRINGSi018039m3e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.16e-19ERF family protein