PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G281200.1.p
Common NameSb04g031770, SORBIDRAFT_04g031770
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 630aa    MW: 65456.2 Da    PI: 8.866
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G281200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS284.72.5e-872646292374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsev 87 
                           ++lL e+A a+++g++++  a La l++ a+p+gd+ qRl+a+++ AL++r+ r         pp ++++      +e+ aa +l++ v
  Sobic.004G281200.1.p 264 RQLLSEAAAAIADGNHAAGAAQLAVLKTAANPRGDAEQRLVAMMASALSSRIGR---------PPAPQHHLAglcGAEQRAAWQLLHAV 343
                           689***************************************************.........444444333456899999******** PP

                  GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeel 172
                           sP++ ++   aN aIl+av+ ++ +H iDfd+s  +Q +aL++aL+sR+     l++T+v++p+s      +++l +t++rL++ A++ 
  Sobic.004G281200.1.p 344 SPCFDLALHGANLAILDAVADQRVIHLIDFDVSI-AQHLALIEALSSRRVAGTCLKVTAVADPTSPftpaLAQALPATEQRLKRHAQQA 431
                           ********************************97.7**************************99888998999**************** PP

                  GRAS 173 gvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                           g++f+f++ v+    ++e ++L ++p  gEal+Vnl++ l r++desvs +++rde+L+ v+ l P+vv++veqe++ n++++++rf++
  Sobic.004G281200.1.p 432 GLEFRFKA-VSCVAGEIEASRLGCEPggGEALVVNLAFVLSRVPDESVSPANPRDELLRGVRALCPRVVTLVEQELNANTAPLAARFAD 519
                           ********.57789999************************************************************************ PP

                  GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
                           a+ +y a+++sl+a+l+r+s +r+  E++ l++++ n+va eg +r+er+e ++kWr+r+++aG++pv++++ +a+ +k+ lr     g
  Sobic.004G281200.1.p 520 ACAHYGAVLESLDATLARDSAQRARGEAA-LANKAANAVAREGPDRVERCEVFGKWRARFGMAGLRPVAIGQGIADRVKARLR----PG 603
                           ****************************9.99***********************************************9987....59 PP

                  GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
                           + v+ +sg l  gWk+r ++++SaWr
  Sobic.004G281200.1.p 604 FDVKLDSGRLGVGWKGRVVTVASAWR 629
                           *************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.767237613IPR005202Transcription factor GRAS
PfamPF035148.7E-85264629IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MDPAGAPWCD PRRGYAYAYG AGSAAQAPAL KRQPRPLLPP RQDVAAVASG GVLKRSHGEV  60
ERWQQALYLR EVRQRVAAQS QIAHPPIDIG SVLAGAVVSR APGSSRPPSS SFAGLSPQPS  120
STLSSLTTAS HLETPPSHML PLLQRQMVAA PSAPPQAVAR VPAAGRSAAR ELVLLQELEK  180
HLLGDDDDGE ADATGSACGS TVTSSAWGDT IQELNSITAA PLASLPNNHN TAPAVSIRSP  240
SNSSSSTASS AASSSPPTST ASSRQLLSEA AAAIADGNHA AGAAQLAVLK TAANPRGDAE  300
QRLVAMMASA LSSRIGRPPA PQHHLAGLCG AEQRAAWQLL HAVSPCFDLA LHGANLAILD  360
AVADQRVIHL IDFDVSIAQH LALIEALSSR RVAGTCLKVT AVADPTSPFT PALAQALPAT  420
EQRLKRHAQQ AGLEFRFKAV SCVAGEIEAS RLGCEPGGGE ALVVNLAFVL SRVPDESVSP  480
ANPRDELLRG VRALCPRVVT LVEQELNANT APLAARFADA CAHYGAVLES LDATLARDSA  540
QRARGEAALA NKAANAVARE GPDRVERCEV FGKWRARFGM AGLRPVAIGQ GIADRVKARL  600
RPGFDVKLDS GRLGVGWKGR VVTVASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-322646296375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.169810.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G281200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570740.0EU957074.1 Zea mays clone 1581966 chitin-inducible gibberellin-responsive protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452751.10.0scarecrow-like protein 8
TrEMBLC5Y0Y10.0C5Y0Y1_SORBI; Uncharacterized protein
STRINGSb04g031770.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41883474
Representative plantOGRP7599918
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.19e-75SCARECROW-like 8