PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G279300.1.p
Common NameSb04g031590, SORBIDRAFT_04g031590
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 456aa    MW: 48145.5 Da    PI: 8.9081
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G279300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-164185147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          r +WT++E+ ++++a +++G   W++I +++g ++t+ q++s+ qk+
  Sobic.004G279300.1.p 41 REKWTEDEHRRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 85
                          789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-153589IPR009057Homeodomain-like
PROSITE profilePS5129419.7323690IPR017930Myb domain
TIGRFAMsTIGR015573.4E-163988IPR006447Myb domain, plants
SMARTSM007171.7E-124088IPR001005SANT/Myb domain
PfamPF002496.5E-144184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-94181IPR009057Homeodomain-like
CDDcd001678.66E-104386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MATGDTAVDQ RKDPLDPRDM DSSGEEHVPK ARKPYTITKQ REKWTEDEHR RFLEALQLHG  60
RAWRRIQEHI GTKTAVQIRS HAQKFFTKVV RESSSGSNNA STGAAPAIQI PPPRPKRKPA  120
HPYPRKVDGG AAKKPAPELK QLEKPPLPLR DQDEGSPTSV LTSAHMVLRA AEGLGSVFAN  180
SSSTASRSAA LSAAGSDERG NGGGSLTSSV DGDGEDACAS PRTRAPYTKV LGDANEVGSE  240
APILKLFGKK VVVEEDLKTD SSPASAVQAT RTGNPIAAAG ASSWNPWQGS VQVQQLMYLV  300
PQPDGFAAQP AVVPWFGYNG GLPCAVFYPQ AVASAPEQQQ QQQASEPLDH RRAQREGSLT  360
GSNMAASSAA ASAAQNSDTA ESSRQGPGGH ENTSDGYAAL RRAAAVPRLT KCASSASLSG  420
RGFVPYKRCA AESEAPRPVA ARGEEADGEM TRLCL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G279300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452742.20.0uncharacterized protein LOC8073204
TrEMBLC5Y0W40.0C5Y0W4_SORBI; Uncharacterized protein
STRINGSb04g031590.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Representative plantOGRP12551549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.38e-35MYB_related family protein