PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G273800.1.p | ||||||||
Common Name | Sb04g031110, SORBIDRAFT_04g031110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 389aa MW: 41050.6 Da PI: 4.3004 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed +l+ +++++G +W++ ++ g+ R++k+c++rw +yl Sobic.004G273800.1.p 16 RGSWTPQEDMRLIAYIQKHGHANWRALPKQAGLLRCGKSCRLRWINYL 63 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.4e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l Sobic.004G273800.1.p 69 RGNFTADEEETIIRLHGLLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.36 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.02E-29 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.87E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.451 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.15E-11 | 71 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 71 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MGRGRAPCCA KVGLNRGSWT PQEDMRLIAY IQKHGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTADEEETI IRLHGLLGNK WSKIAACLPG RTDNEIKNVW NTHLKKKKQV 120 APREEQKAGA AADKNDDDGA ASGEAGTPAT AASSSASSST TTTTTNNSSA GSDNSGDQCG 180 TSREPDVIDA SLLQLEDIDV SDMLVDAPPA AAQPCQAPML SSPCSSSSLT TTCVGGGVEE 240 LIELPVIEIE PEIWSIIDGE SATDAPDASG GGTAPCTGTA AVVSTSEAEE AAAANDWWLE 300 NLEKELGLWG PAEDTQAAHP DLLDHIAAGF SPLGALELER DPVSTYFQTA PAVGEPELMV 360 AEPSAVLLRV INEQQEGTDP FRPVEIEG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-27 | 14 | 117 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G273800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ560979 | 0.0 | FJ560979.1 Saccharum hybrid cultivar Co 86032 MYB transcription factor (MYB21) pseudogene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452709.1 | 0.0 | myb-related protein Zm1 | ||||
Swissprot | P20024 | 1e-171 | MYB1_MAIZE; Myb-related protein Zm1 | ||||
TrEMBL | C5Y0G7 | 0.0 | C5Y0G7_SORBI; Uncharacterized protein | ||||
STRING | Sb04g031110.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 3e-66 | myb domain protein 63 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G273800.1.p |
Entrez Gene | 8073887 |
Publications ? help Back to Top | |||
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