PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G273000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 371aa    MW: 39239 Da    PI: 8.8422
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G273000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94e-32185238255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Sobic.004G273000.1.p 185 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 238
                           9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-28183238IPR009057Homeodomain-like
SuperFamilySSF466892.69E-15183239IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-23185239IPR006447Myb domain, plants
PfamPF002491.9E-7186237IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MELFPAHPDL QLQISPPPAT KPMELGFWKR ALDTTSPATT TAAAAAAAAT ATTAPASLAF  60
ASSAPTTAVG YHAAVAAAGA HQHHHQVPTS SHSHLALPFL HHTQPILPEG GAGGGLRRDL  120
TSMRPIRGIP VYNTSQPLPF LQSHHHHHHP HCYDAIGGHA AAGPRSPKAA LRLAGAPAKR  180
GARAPRMRWT TSLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK SHLQMYRTIK  240
TTDHKPASAS SYGQAAAKAI IDIPDDNLFD LTNTTSGSES SAQHSNPDGG NEHGSSMCAL  300
WCSSSISSKG AWFHDKSRDA TPGDIKSFED VQSQSLDDVV SDLNSSSPFH VAGMFGRGKK  360
PNLDFTLGRI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-16186240458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-16186240458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-16186240357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-16186240357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-16186240357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-16186240357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-16186240458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-16186240458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-16186240458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-16186240458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-16186240458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-16186240458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G273000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369110.0BT036911.1 Zea mays full-length cDNA clone ZM_BFb0147F05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314270.10.0probable transcription factor KAN2 isoform X1
TrEMBLA0A194YS040.0A0A194YS04_SORBI; Uncharacterized protein
STRINGSb04g031030.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94383445
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-32G2-like family protein