PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G271800.1.p
Common NameSb04g030930, SORBIDRAFT_04g030930
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 498aa    MW: 51619.5 Da    PI: 5.9839
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G271800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-30232290259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  Sobic.004G271800.1.p 232 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPSLLVITYNSEHNHP 290
                           699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.684226292IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.0E-31228292IPR003657WRKY domain
SuperFamilySSF1182904.45E-26229292IPR003657WRKY domain
SMARTSM007747.8E-38231291IPR003657WRKY domain
PfamPF031067.7E-26233290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MCDYFLQRME GDQHHQAGDL TDVVRAGGAM HQQGAIAELS SSTATGWQLP AEPAPAGPGL  60
FLPPQPSSSD GGDGFADAFA GLPDPFASDF VRASSSSGGG PVPAADFFDF EAPAAAVGGG  120
ARRGGGGVLV DSGGGGVVVE RGVPQMPALS PREIRPYPVT MIGGDTVKIG VPTMMPGLAV  180
GPACAFDAIA GLQMPSPHGG GIKRRKNQAR KVVCIPAPAA AGGRTTGEVV PSDLWAWRKY  240
GQKPIKGSPY PRGYYRCSSS KGCPARKQVE RSRTDPSLLV ITYNSEHNHP WPTQRNALAG  300
STRSHHAKNS KNNPSQHNLQ KPDLKAEPEH HQASAAVVPT GCATTATTAA TSTTTTATTS  360
TTSNSTPPPA TMAVKEEAMV GSEMEKGMDH DASVLLDHGD LMQQMFSQSY YRPMIPEAGG  420
GGGGHHADDF FADLAELESD PMSLIFPGGG DPGKEKEMMP NKSLGADPLF GMLDWGATNN  480
GVATSAGSSF EQDESGW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-23206293280Disease resistance protein RRS1
5w3x_D2e-23206293280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G271800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0619830.0BT061983.1 Zea mays full-length cDNA clone ZM_BFb0203F20 mRNA, complete cds.
GenBankKJ7277990.0KJ727799.1 Zea mays clone pUT5751 WRKY transcription factor (WRKY11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454437.10.0probable WRKY transcription factor 14
TrEMBLC5Y0F30.0C5Y0F3_SORBI; Uncharacterized protein
STRINGSb04g030930.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-56WRKY DNA-binding protein 35