PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G270600.1.p
Common NameSb04g030830, SORBIDRAFT_04g030830
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 280aa    MW: 30760 Da    PI: 9.2385
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G270600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.6e-342882155
               G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  Sobic.004G270600.1.p 28 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 82
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0322585IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-332583IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-252883IPR006447Myb domain, plants
SuperFamilySSF466891.0E-162884IPR009057Homeodomain-like
PfamPF002498.6E-103081IPR001005SANT/Myb domain
PfamPF143793.8E-24127171IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSMFEGMERA GYGGAGPMGG VVLSRDPKPR LRWTPDLHER FVEAVTKLGG PDKATPKSVL  60
RLMGMKGLTL YHLKSHLQKY RLGKQSKKDT GLEASRGAFA AQGINFSTPV PPSIPSTASN  120
NTGETPLADA LKYQIEVQRK LHEQLEVQKK LQMRIEAQGK YLQTILEKAQ SNLSYDATGG  180
ANLEATRSQL TDFNLALSGF MDNVTQVCEQ KNGELAKAMS EDGLRASNNL GFQLYHHGVQ  240
DRDDVKCATD EGLLLLDLNI RGGYDHRASA DLKMNQHMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-212884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-212884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-212884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-212884157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G270600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0874410.0BT087441.1 Zea mays full-length cDNA clone ZM_BFb0077P10 mRNA, complete cds.
GenBankKJ7279550.0KJ727955.1 Zea mays clone pUT6053 G2-like transcription factor (GLK11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454431.10.0myb family transcription factor PHL11
RefseqXP_021314548.10.0myb family transcription factor PHL11
TrEMBLC5Y0E30.0C5Y0E3_SORBI; Uncharacterized protein
STRINGSb04g030830.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.13e-65G2-like family protein