PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G267000.2.p | ||||||||
Common Name | Sb04g030510, SORBIDRAFT_04g030510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB_related | ||||||||
Protein Properties | Length: 98aa MW: 10864.8 Da PI: 9.7378 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28 | 5e-09 | 4 | 49 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT +l+ +a + + ++ +W+ Iar +g g+t++++k +++ Sobic.004G267000.2.p 4 SWTDSQNKLFERALAVYDKDtpdRWHNIARAVGCGKTAEDVKRHYR 49 7********************************99**********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.945 | 1 | 56 | IPR017884 | SANT domain |
SMART | SM00717 | 2.0E-7 | 1 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.36E-13 | 3 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.9E-7 | 4 | 49 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-4 | 4 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.40E-5 | 4 | 49 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MSSSWTDSQN KLFERALAVY DKDTPDRWHN IARAVGCGKT AEDVKRHYRW LKRDVQQIES 60 GEGGQGSHSS NSSGSGSSSN SCGRNNDDKR MRHPKPQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-20 | 5 | 62 | 11 | 67 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G267000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679452 | 1e-123 | HF679452.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB46 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454420.1 | 3e-67 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 8e-26 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | C5Y0B3 | 7e-66 | C5Y0B3_SORBI; Uncharacterized protein | ||||
STRING | Sb04g030510.1 | 1e-66 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 1e-25 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G267000.2.p |
Entrez Gene | 8073158 |