PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G254400.1.p | ||||||||
Common Name | Sb04g029340, SORBIDRAFT_04g029340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NF-YB | ||||||||
Protein Properties | Length: 198aa MW: 21087.7 Da PI: 8.9201 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 113.9 | 8.2e-36 | 44 | 131 | 6 | 93 |
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 r+lP+an++r+m++v+P+ akis ak+++++c+ ef++f+++eas+++ +++r+t++++d+ +l lGf+dyv+p+++y+++yre Sobic.004G254400.1.p 44 RVLPMANLVRLMRQVIPKSAKISSRAKDLTHDCALEFVGFLAGEASERATAQHRRTMAPEDFTCSLQALGFDDYVKPMNTYISRYREQ 131 89************************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.6E-26 | 43 | 133 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.06E-23 | 44 | 133 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-13 | 46 | 106 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MGRKAKQCPA KKKGGREEKA AAPPPPPAEG ASSSDGEGGT GGTRVLPMAN LVRLMRQVIP 60 KSAKISSRAK DLTHDCALEF VGFLAGEASE RATAQHRRTM APEDFTCSLQ ALGFDDYVKP 120 MNTYISRYRE QVNPAGYRGF ARRPPPPPAT VADVTAAPCV SDEETQRRVP RHGEYDDGGS 180 TSVHAPTPSA HTSPDNM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-25 | 44 | 130 | 11 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing kernels. {ECO:0000269|PubMed:11971906}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269|PubMed:11971906}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G254400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210260 | 1e-112 | AC210260.5 Zea mays BAC clone CH201-44F4 from chromosome 5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452626.1 | 1e-144 | nuclear transcription factor Y subunit B-1 | ||||
Swissprot | Q6Z348 | 5e-37 | NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1 | ||||
TrEMBL | C5XZQ8 | 1e-142 | C5XZQ8_SORBI; Uncharacterized protein | ||||
STRING | Sb04g029340.1 | 1e-143 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13659 | 26 | 31 | Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 2e-26 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G254400.1.p |
Entrez Gene | 8077710 |