PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G253300.1.p
Common NameSb04g029270, SORBIDRAFT_04g029270
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 433aa    MW: 46614.1 Da    PI: 9.0436
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G253300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.31e-16181230255
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r +h++ E+rRR +iN+++e LrellP+     ++K +Ka+ L +++eYI+ Lq
  Sobic.004G253300.1.p 181 RSKHSATEQRRRTKINDRLEILRELLPHG----DQKRDKASFLLEVIEYIRFLQ 230
                           889*************************7....7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-18177241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-22178245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.66179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-14181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-15181234No hitNo description
SMARTSM003533.8E-12185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MQLFQGEKPA HDFLSLHTGG GSSSPSPVQH STQGYELGVH NSLKPLKLGK RRGGGGGEGG  60
AIGVAPSSGL EADSEERVLP GGVGTFSIRQ VASAATQSRG GEAASHGVVV VRGAAAFPPA  120
VHVSRTEGPP HGTESGARAH SGPATMWQDS GMDQRSRGAR GGEGRSRSSG SSADQGPSTP  180
RSKHSATEQR RRTKINDRLE ILRELLPHGD QKRDKASFLL EVIEYIRFLQ EKVQKYESAH  240
PQKNHEDSSM PWAKVYYRSC WKNTENINQG GGLAASTQDT NKEQYGSKQT TVASSALFDT  300
QSAREASAND ISSQKPTSTA QSRADNNIAS KQLPWLSMST SDSDNNRTLS KNEKQTLHED  360
TQSLSDAYSQ GLLNRLTQAL KRSGVDPSQA SISVEISMDR RGTEPNNIRD DLKDNECEDT  420
IHVTKKLRCE RS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14551LKLGKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G253300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0547900.0BT054790.1 Zea mays full-length cDNA clone ZM_BFb0052O12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316051.10.0transcription factor BIM2
TrEMBLA0A194YRH90.0A0A194YRH9_SORBI; Uncharacterized protein
STRINGSb04g029270.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-37BES1-interacting Myc-like protein 2