PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G250000.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 27569.4 Da PI: 9.8497 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.8 | 3.3e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +iifsstg+lye+ss Sobic.004G250000.3.p 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGRLYEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 78.1 | 2.2e-26 | 78 | 170 | 6 | 98 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 g+++++++ +q+e+a L+++++nLq+++++l+Ge+L+ L +++Lq+Le++Le sl++iR +K+++l+++ieel +k +++en++L Sobic.004G250000.3.p 78 GTNNATSELMLWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQSLESHLEMSLRSIRMRKDHILKSEIEELHRKGSLIHQENMEL 166 55578888999*****************************************************************************9 PP K-box 95 rkkl 98 + + Sobic.004G250000.3.p 167 GRTV 170 8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.5E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.38 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.15E-44 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 1.1E-32 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.7E-25 | 84 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.597 | 86 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGRLYEFSST 60 NMKAVIDRYG KAKEEQIGTN NATSELMLWQ REAASLRQQL HNLQESHKQL MGEELSGLGV 120 RDLQSLESHL EMSLRSIRMR KDHILKSEIE ELHRKGSLIH QENMELGRTV DVMSQQKVEL 180 HRKLQASEPR GVADASSSTP YSFSITTQYA DVPANLEQRQ SQQKEGDRRK ELMAPELGLQ 240 LH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-21 | 1 | 74 | 1 | 74 | MEF2C |
5f28_B | 2e-21 | 1 | 74 | 1 | 74 | MEF2C |
5f28_C | 2e-21 | 1 | 74 | 1 | 74 | MEF2C |
5f28_D | 2e-21 | 1 | 74 | 1 | 74 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.7215 | 1e-149 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedling roots and shoots (PubMed:14701936). Highly expressed in young leaves (PubMed:23463009). {ECO:0000269|PubMed:14701936, ECO:0000269|PubMed:23463009}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G250000.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021315544.1 | 1e-177 | MADS-box transcription factor 57-like isoform X3 | ||||
Swissprot | Q6Z6W2 | 1e-129 | MAD57_ORYSJ; MADS-box transcription factor 57 | ||||
TrEMBL | A0A1Z5RNZ6 | 1e-176 | A0A1Z5RNZ6_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Ab02921.1.p | 1e-144 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 3e-89 | AGAMOUS-like 16 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G250000.3.p |
Publications ? help Back to Top | |||
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