PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G249500.1.p
Common NameSb04g028920, SORBIDRAFT_04g028920
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CO-like
Protein Properties Length: 489aa    MW: 52603.9 Da    PI: 5.5734
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G249500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.4e-081960338
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                          +r C+ + + +++++C  ++ +lC+ C  + H+       H+
  Sobic.004G249500.1.p 19 ARACDSCLRRRARWYCAADDAFLCQGCDASVHSAnplarrHE 60
                          578*****************************6566777776 PP
2CCT67.63.3e-23428471144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Sobic.004G249500.1.p 428 REARVTRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRP 471
                           9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.3E-111764IPR000315B-box-type zinc finger
PROSITE profilePS5011910.681764IPR000315B-box-type zinc finger
PfamPF006431.5E-62061IPR000315B-box-type zinc finger
CDDcd000216.18E-92264No hitNo description
PfamPF062035.9E-18428470IPR010402CCT domain
PROSITE profilePS5101716.033428470IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MSSSKHAAAG AGAVGGKAAR ACDSCLRRRA RWYCAADDAF LCQGCDASVH SANPLARRHE  60
RLRLRPMTSP PDPAHSTLEA GGVGVASTST WKKRQQQQQQ VAPAWSKRKA RTRRPHVKSV  120
GQLLSRKLVV VPEVATVESS EERKVEEEDE EEEEEEEQLL YCVPTFDRAL AELCTPPPPL  180
DDPTATASSS CCRDNDVDGA VDNAKAAPPA VVVAESPVQQ LPDSFAGFGP TDAELREFAA  240
DMEALLGQGL GDSNELDESF YMESLGLMTT TQQAEDVDVG RVKMEPNGSV ISRSRGEGAP  300
GFGPAELMKP EASSAEVLVL DIDFNCSSPT VMMDHEDEDS FEHKASASNG DAAAAGTQFL  360
KRSLDLSLNY EAIIESWGSS PWTDGQRPNV QLDDFWPHAH LTGWMAGGGR LGGEAAAVSP  420
RLGMVGGREA RVTRYREKRR TRLFAKKIRY EVRKLNAEKR PRMKGRFVKR PAAAGGGGAA  480
IAAPCAVT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1438454RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G249500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280490.0KJ728049.1 Zea mays clone pUT6195 C2C2-CO-like transcription factor (COL12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646195.10.0zinc finger protein CONSTANS-LIKE 16 isoform X2
TrEMBLC5XZC40.0C5XZC4_SORBI; Uncharacterized protein
STRINGSb04g028920.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-45B-box type zinc finger protein with CCT domain