PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G233200.1.p | ||||||||
Common Name | Sb04g027660, SORBIDRAFT_04g027660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 332aa MW: 35734.8 Da PI: 6.6326 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.8e-20 | 160 | 209 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++a+ +l+g Sobic.004G233200.1.p 160 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 209 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.35E-32 | 159 | 219 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-22 | 160 | 218 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.4E-38 | 160 | 223 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-32 | 160 | 218 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.117 | 160 | 217 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-13 | 161 | 209 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 161 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 183 | 199 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MAAAIDMYKY YNAHQIASSS PSDEELAKAL EPFITSASSS SPYHRYSSSP SMSQDSYMPT 60 PSYTSFATSP LPTPAATSSS SSPFSQLPPL YSSPYAAPSM VGQMGLNQLG PAQIQQIQAQ 120 FMFQQQQQQQ RGLHAAFLGP RAQPMKQSGS PPLAPAQSKL YRGVRQRHWG KWVAEIRLPK 180 NRTRLWLGTF DTAEDAALAY DKAAFRLRGD MARLNFPALR RDGAHLAGPL HASVDAKLTA 240 ICQSLTGSKN GGSSGDESAG SPPDSPKCSA SASTEGEEES GSAGSPPSPT LAPPVPEMAK 300 LDFTEAPWDE TETFHLRKYP SWEIDWDSIL S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-22 | 156 | 217 | 1 | 63 | ATERF1 |
3gcc_A | 8e-22 | 156 | 217 | 1 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.1171 | 0.0 | embryo| leaf| panicle| root| shoot |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G233200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ805750 | 0.0 | FJ805750.1 Zea mays DRE-binding protein 2 (DBP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454259.1 | 0.0 | ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | C5XYP1 | 0.0 | C5XYP1_SORBI; Uncharacterized protein | ||||
STRING | Sb04g027660.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 4e-47 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G233200.1.p |
Entrez Gene | 8066410 |