PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G231700.1.p
Common NameSb04g027540, SORBIDRAFT_04g027540
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB
Protein Properties Length: 331aa    MW: 36591.3 Da    PI: 6.0965
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G231700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.7e-191461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd++l ++++++G g+W++ +r  g++R++k+c++rw +yl
  Sobic.004G231700.1.p 14 KGPWTPEEDQKLMEYIQKHGHGSWRALPRLAGLNRCGKSCRLRWTNYL 61
                          79********************************************97 PP
2Myb_DNA-binding57.92.3e-1867112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg++T+eE++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
  Sobic.004G231700.1.p  67 RGKFTQEEEQTILQLHSVLGNK-WSAIAKHLP-GRTDNEIKNFWNTHL 112
                           89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-27564IPR009057Homeodomain-like
PROSITE profilePS5129418.992961IPR017930Myb domain
SuperFamilySSF466892.9E-3311108IPR009057Homeodomain-like
SMARTSM007172.5E-151363IPR001005SANT/Myb domain
PfamPF002497.0E-181461IPR001005SANT/Myb domain
CDDcd001673.22E-121661No hitNo description
PROSITE profilePS5129428.19262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-2965117IPR009057Homeodomain-like
SMARTSM007171.1E-1766114IPR001005SANT/Myb domain
PfamPF002493.2E-1767112IPR001005SANT/Myb domain
CDDcd001671.62E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLMEYIQ KHGHGSWRAL PRLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF TQEEEQTILQ LHSVLGNKWS AIAKHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DFFAALPQLI ALANLRQLVE QRPWDDHTAR IQVEAVQAAK LQCLQNLLQS  180
AASIATSPSS SSINTNTIPS DLEQIGLLSP PQMSSLSTLP SPSFLESISG QDIAAAGQLP  240
DIQIPSSFFE QQPTSNDANQ HSDFTPKSSV EGENGTPKTL LLSENSLPPL TDFPISNLGD  300
ACGASSCDGS SIPFPSWPEL FDEQFICEFV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-32121162105C-Myb DNA-Binding Domain
1msf_C6e-32121162105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G231700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0700450.0BT070045.1 Zea mays full-length cDNA clone ZM_BFb0376N06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452535.10.0transcription factor MYB41
SwissprotQ9S9Z21e-103MYB93_ARATH; Transcription factor MYB93
TrEMBLC5XYD80.0C5XYD8_SORBI; Uncharacterized protein
STRINGSb04g027540.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-102myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]