PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G227400.2.p
Common NameSb04g027180, SORBIDRAFT_04g027180
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 469aa    MW: 49407 Da    PI: 9.4709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G227400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-19226276256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Sobic.004G227400.2.p 226 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 276
                           59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.22E-32225285No hitNo description
PROSITE profilePS5103223.024226283IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-32226284IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23226284IPR016177DNA-binding domain
SMARTSM003801.1E-38226289IPR001471AP2/ERF domain
PRINTSPR003678.5E-11227238IPR001471AP2/ERF domain
PfamPF008472.8E-12227276IPR001471AP2/ERF domain
PRINTSPR003678.5E-11249265IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEPVGGDGGG GGGRGRGRGR GGWKGKGVSG SGSAAAGRQL APVLEDAPAA ALLRPLKKIR  60
SPDRRLNRSL SSLSSAPPSP DSSSVSNPLS PQSTRHIFPF AYDQAPAAST AAAAAASTAG  120
SPRLLPLLQY SSVFQQPLPP QPQQHQHQQI ISFGSSELPQ QQFGAAAAAP LFPPHLLAPE  180
VQQQMLLRYW SEALNLSPRG FRGGGAVPPA LYQQLLMRAS GPPTKLYRGV RQRHWGKWVA  240
EIRLPRNRTR LWLGTFDTAE DAAMAYDREA FKLRGENAKL NFPDLFLGKG RVGGSGRTSA  300
SAAASCSSSS SSAPPTPDEN HTKQAQQQHD GGQQPCNSEA KPLLPETEQA KSSEPEPNPQ  360
LQSADHQGGD GNTVMFQPSS VASGGVWGPA DEAWFSAWGP GSSVWDYDMD NAHGLFLQSR  420
FASEATSMDY VSSTPEAPAA PVAGTAMASA ASLPPPPPPR SPTYMWKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19225283463ATERF1
3gcc_A1e-19225283463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.88000.0root| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G227400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276740.0KJ727674.1 Zea mays clone pUT5601 AP2-EREBP transcription factor (EREB76) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454234.10.0ethylene-responsive transcription factor ERF053
TrEMBLA0A1Z5RPK90.0A0A1Z5RPK9_SORBI; Uncharacterized protein
STRINGSb04g027180.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.18e-37ERF family protein