PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G225400.1.p | ||||||||
Common Name | Sb04g026970, SORBIDRAFT_04g026970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | TCP | ||||||||
Protein Properties | Length: 223aa MW: 23113.2 Da PI: 10.4412 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.7 | 5.2e-35 | 57 | 162 | 9 | 115 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.kaaksaak 96 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +ss s+s+sss+ ++a+++ Sobic.004G225400.1.p 57 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSIMAATGSGTTPAVFV--SSSAPSTSSSSSHyHQATATVL 143 89*******************************************************99999555..2222222222223233333334 PP TCP 97 skksqksaasalnlakesr 115 +k+++++ +a a s Sobic.004G225400.1.p 144 GKRQREEGDAAMGTAPASA 162 4444444443333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-31 | 56 | 141 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.955 | 56 | 110 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MATTRDVSTA AAAAAAMFHV YQPMPMPMPS TAAAADAGAM VPAPATKQVK REGGGGKDRH 60 SKVNGRGRRV RMPIVCAARV FQLTRELGLK SDGQTIEWLL RQAEPSIMAA TGSGTTPAVF 120 VSSSAPSTSS SSSHYHQATA TVLGKRQREE GDAAMGTAPA SAFWAALPAA AAPRTTEAWG 180 FSPLEAQAAA AYVPMAQAQH HHHLNLLAAL SGAARRAEEE TR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00655 | PBM | Transfer from LOC_Os02g42380 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G225400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727699 | 1e-151 | KJ727699.1 Zea mays clone pUT5638 TCP transcription factor (TCP16) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452500.1 | 1e-158 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 2e-40 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | C5XY73 | 1e-157 | C5XY73_SORBI; Uncharacterized protein | ||||
STRING | Sb04g026970.1 | 1e-158 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 3e-33 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G225400.1.p |
Entrez Gene | 8074795 |