PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G221400.1.p
Common NameSb04g026610, SORBIDRAFT_04g026610
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 709aa    MW: 76087.9 Da    PI: 7.0965
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G221400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.2e-23121222199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g  W++++iyr++++r++lt+GW+ Fv++++L +gD++vF
  Sobic.004G221400.1.p 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVVAKDVHGAAWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVF 207
                           89*****************************96555555..8*********************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              + +++ l+v+++r+
  Sobic.004G221400.1.p 208 L--RGDSGDLHVGIRRA 222
                           *..3478889*****97 PP
2Auxin_resp111.86.4e-37273356183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                           aa+ a+ ++ Fe vY+Prast+eF+v+++ v++a++v++s+GmRfkmafetedss++++ +Gtv+gv+ +dp+rWp+S+Wr+L+
  Sobic.004G221400.1.p 273 AARLAAAGQSFEAVYYPRASTPEFCVRAAAVRAAMRVQWSPGMRFKMAFETEDSSRISWfMGTVAGVQVTDPIRWPQSPWRLLQ 356
                           6788999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-37111224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-29115223IPR015300DNA-binding pseudobarrel domain
CDDcd100172.52E-21120221No hitNo description
PfamPF023629.6E-22121222IPR003340B3 DNA binding domain
SMARTSM010196.9E-21121223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.901121223IPR003340B3 DNA binding domain
PfamPF065078.7E-32273356IPR010525Auxin response factor
PROSITE profilePS5174515.769622702IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MITFADLTEP ATAGAERCVD RQLWLACAGG MCTVPPVGAS VYYFPQGHAE HALGLAGTAD  60
LSAARVPALV PCRVAAVRYM ADPDTDEVFA RIRLVPLRGG EADAGGLEDD AADEQEKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYAADPPVQT VVAKDVHGAA WKFRHIYRGT  180
PRRHLLTTGW STFVNQKKLV AGDSIVFLRG DSGDLHVGIR RAKRGFCGAG GGGGEEAPSP  240
GWDHYAGLMR GNVSPCAAAK ARGKVRPEDV AEAARLAAAG QSFEAVYYPR ASTPEFCVRA  300
AAVRAAMRVQ WSPGMRFKMA FETEDSSRIS WFMGTVAGVQ VTDPIRWPQS PWRLLQVTWD  360
EPDLLQNVKR VSPWLVELVS SMPAIHLASF SPPRKKPRIP AYPEFPFEGQ LLNPAFPPNP  420
LPHGQHPHPH HHFLHAHPPF FPFPDGSAPA AIQGARHAQF VPSLSDLHLT HLQSSLLYPG  480
LRRPDHVGPT IPIPARISTD LTIGGAPARD DDVPCALSIG ATNKQKPDAV KPAGLVLFGR  540
TILTEQQMSL SSSGGATSPA ATTGNSSQLY WNAEKGPNVS EGSGSGVIQN SPTKNHASSE  600
RLPWCVGDGG SQQQVSELGL EPGQCKVFVE SDTVGRNLDL SALSSFDELY RRLSEMFGIE  660
GAELRSRVLY RCATGEVKHA GDEPFSDFVR SARRLTILTD AGSDNLGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-761937751388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.186640.0ovary| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G221400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9553850.0EU955385.1 Zea mays clone 1530377 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452482.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLC5XXU70.0C5XXU7_SORBI; Auxin response factor
STRINGSb04g026610.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16