PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.004G219500.1.p | ||||||||
Common Name | Sb04g026440, SORBIDRAFT_04g026440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 33099.6 Da PI: 6.1244 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.7 | 1.6e-51 | 10 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrF P+deelv++yL+kkv+++++ ++ evd++ ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd Sobic.004G219500.1.p 10 LPPGFRFYPSDEELVCHYLHKKVANERIAQ-GTLVEVDLHAREPWELPEVAKLTATEWYFFSFRDRKYATGSRTNRATKTGYWKATGKD 97 79*************************998.88***************87788899********************************* PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ev s+ +g++vg++ktLvfy+grap+g+k+ Wvmhe+rl Sobic.004G219500.1.p 98 REVRSSssSGAVVGMRKTLVFYRGRAPNGVKSGWVMHEFRL 138 ****98778889***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-61 | 7 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.171 | 10 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-28 | 11 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 303 aa Download sequence Send to blast |
MALREIESTL PPGFRFYPSD EELVCHYLHK KVANERIAQG TLVEVDLHAR EPWELPEVAK 60 LTATEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDREV RSSSSSGAVV GMRKTLVFYR 120 GRAPNGVKSG WVMHEFRLDT PHSPPREDWV LCRVFQKTKG DGGDGQDGDY SSSSPAFAGT 180 SQAMPDPDYY SAASSAGSGY YGLAFAPPPP QQQEEVAAPV LPQYYYGGTV DVDHHHHHHG 240 FTRDDNVGAA LPGFGGAMMR GSSVAAGGDQ YGFGYFDMGG GGFDDMASFG GGDMDFVPQV 300 WS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-49 | 5 | 157 | 10 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sbi.10834 | 1e-103 | ovary| root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.004G219500.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT038122 | 0.0 | BT038122.1 Zea mays full-length cDNA clone ZM_BFb0212P24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452475.1 | 0.0 | NAC domain-containing protein 100 | ||||
Swissprot | Q9FLJ2 | 6e-61 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | C5XXS9 | 0.0 | C5XXS9_SORBI; Uncharacterized protein | ||||
STRING | Sb04g026440.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-73 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.004G219500.1.p |
Entrez Gene | 8066160 |
Publications ? help Back to Top | |||
---|---|---|---|
|