PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G207200.1.p | ||||||||
Common Name | Sb04g025260, SORBIDRAFT_04g025260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 339aa MW: 35223.7 Da PI: 9.2189 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39 | 1.5e-12 | 274 | 319 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k s a++L +Ave+Ik Lq Sobic.004G207200.1.p 274 SIAERERRTRISEKLRKLQDLVPNM----DKQTSTADMLDLAVEHIKGLQ 319 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.748 | 268 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.13E-15 | 271 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.51E-12 | 272 | 323 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.9E-15 | 273 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.7E-10 | 274 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-13 | 274 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MRRFLPAGGG GGGGGEPSSS SSSGGQHQHG GGLAGERAAA GLRYRGGDIS LGHGHDDGHR 60 RHQYHLGAGD AADRQNDGSM DMLARHSSSP VGFFSNLVMD NGYPRSNKAG VSGGGEGQRD 120 PSTANNNSGS SSSGRKMKPS SSGFNFAGGT QQQGQQQGAA GGHLSRISED GCASFPAGGL 180 VGDRAAGGRG SGESSSGGAA AAARSYSGGF SIVGPWEESR DIITTLGAYD PQFSGAMAGT 240 ALEMAGMDRY MQLQQDQVPF KVRAKRGCAT HPRSIAERER RTRISEKLRK LQDLVPNMDK 300 QTSTADMLDL AVEHIKGLQS ELQALKHEQE KCTCCRKR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G207200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452412.1 | 0.0 | transcription factor bHLH80 | ||||
TrEMBL | C5XX69 | 0.0 | C5XX69_SORBI; Uncharacterized protein | ||||
STRING | Sb04g025260.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11531 | 31 | 41 | Representative plant | OGRP511 | 15 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 2e-45 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G207200.1.p |
Entrez Gene | 8072429 |